Planaria EST Database


DrC_02070

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02070
         (591 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O96539|ATE1_DROME  Arginyl-tRNA--protein transferase 1 (R...    59   1e-08
sp|Q9ZT48|ATE1_ARATH  Arginyl-tRNA--protein transferase 1 (R...    54   3e-07
sp|O95260|ATE1_HUMAN  Arginyl-tRNA--protein transferase 1 (R...    53   6e-07
sp|Q9Z2A5|ATE1_MOUSE  Arginyl-tRNA--protein transferase 1 (R...    53   6e-07
sp|Q9PNQ6|ATE_CAMJE  Putative arginyl-tRNA--protein transfer...    37   0.048
sp|Q88FS6|ATE_PSEPK  Putative arginyl-tRNA--protein transfer...    36   0.063
sp|Q7WGE5|ATE_BORBR  Putative arginyl-tRNA--protein transfer...    35   0.14 
sp|Q7W4W7|ATE_BORPA  Putative arginyl-tRNA--protein transfer...    35   0.14 
sp|Q9I0M0|ATE_PSEAE  Putative arginyl-tRNA--protein transfer...    33   0.70 
sp|P16639|ATE1_YEAST  Arginyl-tRNA--protein transferase 1 (R...    33   0.70 
>sp|O96539|ATE1_DROME Arginyl-tRNA--protein transferase 1 (R-transferase 1)
           (Arginyltransferase 1) (Arginine-tRNA--protein
           transferase 1)
          Length = 484

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = -3

Query: 442 PDFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSR 305
           P  ++YYMGFY+H C KMRYK   ++   LLCP TY W+P+ ++ R
Sbjct: 362 PSLKYYYMGFYIHSCPKMRYKG-KLSPSYLLCPETYEWLPLTDVIR 406

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 591 GVIDIVPYALSSVYLFYDPDFSF 523
           GVIDI+P  +SSVY FYDPD+SF
Sbjct: 317 GVIDILPGCVSSVYFFYDPDYSF 339
>sp|Q9ZT48|ATE1_ARATH Arginyl-tRNA--protein transferase 1 (R-transferase 1)
           (Arginyltransferase 1) (Arginine-tRNA--protein
           transferase 1)
          Length = 632

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = -3

Query: 475 VNEITKTKCADPDFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVP 323
           +N + + +   P  ++YY+G+Y+H C KMRYK+    ++ LLCP+ + WVP
Sbjct: 429 INWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSE-LLCPLRFQWVP 478

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = -1

Query: 591 GVIDIVPYALSSVYLFYDPDFSF 523
           GV+DI+P  LSSVYLF+DPD++F
Sbjct: 395 GVVDILPKCLSSVYLFWDPDYAF 417
>sp|O95260|ATE1_HUMAN Arginyl-tRNA--protein transferase 1 (R-transferase 1)
           (Arginyltransferase 1) (Arginine-tRNA--protein
           transferase 1)
          Length = 518

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = -3

Query: 430 FYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSRNFE*NK 287
           +YYMGFY+H C KM+YK     +  LLCP TY WVP++    + E +K
Sbjct: 403 YYYMGFYIHSCPKMKYKGQYRPSD-LLCPETYVWVPIEQCLPSLENSK 449

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -1

Query: 591 GVIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFE 487
           GVIDI+P  +SSVYL+YDPD+SF L   V+SAL E
Sbjct: 354 GVIDILPNCVSSVYLYYDPDYSF-LSLGVYSALRE 387
>sp|Q9Z2A5|ATE1_MOUSE Arginyl-tRNA--protein transferase 1 (R-transferase 1)
           (Arginyltransferase 1) (Arginine-tRNA--protein
           transferase 1)
          Length = 516

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -3

Query: 430 FYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVK 317
           +YYMGFY+H C KMRYK     +  LLCP TY WVP++
Sbjct: 401 YYYMGFYIHSCPKMRYKGQYRPSD-LLCPETYVWVPIE 437

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = -1

Query: 591 GVIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFE 487
           GV+DI+PY + SVYL+YDPD+SF L   V+SAL E
Sbjct: 352 GVLDILPYCVFSVYLYYDPDYSF-LSLGVYSALRE 385
>sp|Q9PNQ6|ATE_CAMJE Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 239

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFENQIS 475
           +IDI+   +SS+Y FYDPDFS+  + + FS L E QI+
Sbjct: 156 LIDILEDGISSIYCFYDPDFSYFSLGK-FSLLNEIQIA 192

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 487 KSNFVNEITKTKCADPDFRFYYMGFYVHKCLKMRYKSPNITNQML 353
           K + +NEI   K  + D+   Y+G++V KC  + YK+    N++L
Sbjct: 182 KFSLLNEIQIAKKMNLDY--IYLGYFVKKCQSLSYKADYTPNEIL 224
>sp|Q88FS6|ATE_PSEPK Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 235

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDFS------FSLIWEVFSALFEN 484
           V D++P  LS+VY FY+PD        F+++W++  AL +N
Sbjct: 158 VCDLLPNGLSAVYTFYEPDEERRSLGRFAILWQITEALRQN 198
>sp|Q7WGE5|ATE_BORBR Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
 sp|Q7VTR8|ATE_BORPE Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 244

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDF-----SFSLIWEV 505
           +ID++   LSSVY FYDPD      ++S++W++
Sbjct: 167 IIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQI 199
>sp|Q7W4W7|ATE_BORPA Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 244

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDF-----SFSLIWEV 505
           +ID++   LSSVY FYDPD      ++S++W++
Sbjct: 167 IIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQI 199
>sp|Q9I0M0|ATE_PSEAE Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 235

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDFS------FSLIWEV 505
           V D++P  LS+VY FYDPD        ++++W++
Sbjct: 158 VTDVLPNGLSAVYTFYDPDEEQRSLGRYAILWQI 191
>sp|P16639|ATE1_YEAST Arginyl-tRNA--protein transferase 1 (R-transferase 1)
           (Arginyltransferase 1) (Arginine-tRNA--protein
           transferase 1)
          Length = 503

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 439 DFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSRNFE*NKSFL 278
           + ++YY+G+Y+  C KM YK+      + +C   Y  +P+K +       K F+
Sbjct: 285 NLQYYYLGYYIEDCPKMNYKANYGAEVLDVCHSKY--IPLKPIQDMISRGKLFV 336

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 588 VIDIVPYALSSVYLFYDPDFS 526
           V DI+P  +SSVY  +DPD+S
Sbjct: 245 VSDILPSGISSVYFIWDPDYS 265
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,004,123
Number of Sequences: 369166
Number of extensions: 1209479
Number of successful extensions: 2629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)