Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_H21
(591 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O96539|ATE1_DROME Arginyl-tRNA--protein transferase 1 (R... 59 1e-08
sp|Q9ZT48|ATE1_ARATH Arginyl-tRNA--protein transferase 1 (R... 54 3e-07
sp|O95260|ATE1_HUMAN Arginyl-tRNA--protein transferase 1 (R... 53 6e-07
sp|Q9Z2A5|ATE1_MOUSE Arginyl-tRNA--protein transferase 1 (R... 53 6e-07
sp|Q9PNQ6|ATE_CAMJE Putative arginyl-tRNA--protein transfer... 37 0.048
sp|Q88FS6|ATE_PSEPK Putative arginyl-tRNA--protein transfer... 36 0.063
sp|Q7WGE5|ATE_BORBR Putative arginyl-tRNA--protein transfer... 35 0.14
sp|Q7W4W7|ATE_BORPA Putative arginyl-tRNA--protein transfer... 35 0.14
sp|Q9I0M0|ATE_PSEAE Putative arginyl-tRNA--protein transfer... 33 0.70
sp|P16639|ATE1_YEAST Arginyl-tRNA--protein transferase 1 (R... 33 0.70
>sp|O96539|ATE1_DROME Arginyl-tRNA--protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginine-tRNA--protein
transferase 1)
Length = 484
Score = 58.5 bits (140), Expect = 1e-08
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = -3
Query: 442 PDFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSR 305
P ++YYMGFY+H C KMRYK ++ LLCP TY W+P+ ++ R
Sbjct: 362 PSLKYYYMGFYIHSCPKMRYKG-KLSPSYLLCPETYEWLPLTDVIR 406
Score = 40.8 bits (94), Expect = 0.003
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -1
Query: 591 GVIDIVPYALSSVYLFYDPDFSF 523
GVIDI+P +SSVY FYDPD+SF
Sbjct: 317 GVIDILPGCVSSVYFFYDPDYSF 339
>sp|Q9ZT48|ATE1_ARATH Arginyl-tRNA--protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginine-tRNA--protein
transferase 1)
Length = 632
Score = 53.9 bits (128), Expect = 3e-07
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = -3
Query: 475 VNEITKTKCADPDFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVP 323
+N + + + P ++YY+G+Y+H C KMRYK+ ++ LLCP+ + WVP
Sbjct: 429 INWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSE-LLCPLRFQWVP 478
Score = 40.4 bits (93), Expect = 0.003
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = -1
Query: 591 GVIDIVPYALSSVYLFYDPDFSF 523
GV+DI+P LSSVYLF+DPD++F
Sbjct: 395 GVVDILPKCLSSVYLFWDPDYAF 417
>sp|O95260|ATE1_HUMAN Arginyl-tRNA--protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginine-tRNA--protein
transferase 1)
Length = 518
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = -3
Query: 430 FYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSRNFE*NK 287
+YYMGFY+H C KM+YK + LLCP TY WVP++ + E +K
Sbjct: 403 YYYMGFYIHSCPKMKYKGQYRPSD-LLCPETYVWVPIEQCLPSLENSK 449
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = -1
Query: 591 GVIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFE 487
GVIDI+P +SSVYL+YDPD+SF L V+SAL E
Sbjct: 354 GVIDILPNCVSSVYLYYDPDYSF-LSLGVYSALRE 387
>sp|Q9Z2A5|ATE1_MOUSE Arginyl-tRNA--protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginine-tRNA--protein
transferase 1)
Length = 516
Score = 52.8 bits (125), Expect = 6e-07
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = -3
Query: 430 FYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVK 317
+YYMGFY+H C KMRYK + LLCP TY WVP++
Sbjct: 401 YYYMGFYIHSCPKMRYKGQYRPSD-LLCPETYVWVPIE 437
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = -1
Query: 591 GVIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFE 487
GV+DI+PY + SVYL+YDPD+SF L V+SAL E
Sbjct: 352 GVLDILPYCVFSVYLYYDPDYSF-LSLGVYSALRE 385
>sp|Q9PNQ6|ATE_CAMJE Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 239
Score = 36.6 bits (83), Expect = 0.048
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDFSFSLIWEVFSALFENQIS 475
+IDI+ +SS+Y FYDPDFS+ + + FS L E QI+
Sbjct: 156 LIDILEDGISSIYCFYDPDFSYFSLGK-FSLLNEIQIA 192
Score = 30.8 bits (68), Expect = 2.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 487 KSNFVNEITKTKCADPDFRFYYMGFYVHKCLKMRYKSPNITNQML 353
K + +NEI K + D+ Y+G++V KC + YK+ N++L
Sbjct: 182 KFSLLNEIQIAKKMNLDY--IYLGYFVKKCQSLSYKADYTPNEIL 224
>sp|Q88FS6|ATE_PSEPK Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 235
Score = 36.2 bits (82), Expect = 0.063
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDFS------FSLIWEVFSALFEN 484
V D++P LS+VY FY+PD F+++W++ AL +N
Sbjct: 158 VCDLLPNGLSAVYTFYEPDEERRSLGRFAILWQITEALRQN 198
>sp|Q7WGE5|ATE_BORBR Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
sp|Q7VTR8|ATE_BORPE Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 244
Score = 35.0 bits (79), Expect = 0.14
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDF-----SFSLIWEV 505
+ID++ LSSVY FYDPD ++S++W++
Sbjct: 167 IIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQI 199
>sp|Q7W4W7|ATE_BORPA Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 244
Score = 35.0 bits (79), Expect = 0.14
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDF-----SFSLIWEV 505
+ID++ LSSVY FYDPD ++S++W++
Sbjct: 167 IIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQI 199
>sp|Q9I0M0|ATE_PSEAE Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 235
Score = 32.7 bits (73), Expect = 0.70
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDFS------FSLIWEV 505
V D++P LS+VY FYDPD ++++W++
Sbjct: 158 VTDVLPNGLSAVYTFYDPDEEQRSLGRYAILWQI 191
>sp|P16639|ATE1_YEAST Arginyl-tRNA--protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginine-tRNA--protein
transferase 1)
Length = 503
Score = 32.7 bits (73), Expect = 0.70
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 439 DFRFYYMGFYVHKCLKMRYKSPNITNQMLLCPVTYSWVPVKNLSRNFE*NKSFL 278
+ ++YY+G+Y+ C KM YK+ + +C Y +P+K + K F+
Sbjct: 285 NLQYYYLGYYIEDCPKMNYKANYGAEVLDVCHSKY--IPLKPIQDMISRGKLFV 336
Score = 30.4 bits (67), Expect = 3.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 588 VIDIVPYALSSVYLFYDPDFS 526
V DI+P +SSVY +DPD+S
Sbjct: 245 VSDILPSGISSVYFIWDPDYS 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,004,123
Number of Sequences: 369166
Number of extensions: 1209479
Number of successful extensions: 2629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)