Planaria EST Database


DrC_02066

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02066
         (905 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CGF7|TCRG1_MOUSE  Transcription elongation regulator 1 ...   204   3e-52
sp|O14776|TCRG1_HUMAN  Transcription elongation regulator 1 ...   204   3e-52
sp|Q9R1C7|FNBP3_MOUSE  Formin-binding protein 3 (Formin-bind...    43   0.001
sp|O75400|FNBP3_HUMAN  Formin-binding protein 3 (Huntingtin ...    43   0.001
sp|Q09685|HGP1_SCHPO  Hyphal growth protein 1                      40   0.012
sp|Q9U7E0|ATRX_CAEEL  Transcriptional regulator ATRX homolog...    37   0.099
sp|Q5F457|WBP4_CHICK  WW domain-binding protein 4 (WBP-4)          35   0.38 
sp|Q9UIF8|BAZ2B_HUMAN  Bromodomain adjacent to zinc finger d...    32   1.9  
sp|P33203|PRP40_YEAST  Pre-mRNA processing protein PRP40           32   3.2  
sp|P18418|CRTC_RAT  Calreticulin precursor (CRP55) (Calregul...    32   3.2  
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 (TATA box-binding
            protein-associated factor 2S) (Transcription factor
            CA150) (p144) (Formin-binding protein 28) (FBP 28)
          Length = 1100

 Score =  204 bits (519), Expect = 3e-52
 Identities = 113/264 (42%), Positives = 150/264 (56%)
 Frame = +1

Query: 91   KARDKSKPISSTPVSGTPWCIVWTGDGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEP 270
            KA  K+KP+++TP+ GTPWC+VWTGD RVF++NP  RLS+WDRPDDL  R DVDKI+QEP
Sbjct: 518  KAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 577

Query: 271  PXXXXXXXXXXXXXXTNDSDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDAN 450
            P                        +  ++A +EE+   +  E NEDE   +   + D N
Sbjct: 578  PHKKGLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELME--EMNEDEPIKAKKRKRDDN 635

Query: 451  DISKDSIPLSXXXXXXXXXXXXXXRALLPMDVRVAQFREMLIEKQVSAFSTWEKELHKIV 630
               KD I                 RA++P++ R+ QF++ML+E+ VSAFSTWEKELHKIV
Sbjct: 636  ---KD-IDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIV 691

Query: 631  FDPRYLLLVSKERKIAFENYVXXXXXXXXXXXXNQVRENKDLFKKLLKEASLNHXXXXXX 810
            FDPRYLLL  KERK  F+ YV            N++ + K+ FKK+++EA  N       
Sbjct: 692  FDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 751

Query: 811  XXXXXXXXERFKAIEKARDRETMF 882
                     RFKAIEK +DRE +F
Sbjct: 752  FAAKHAKDSRFKAIEKMKDREALF 775

 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 26/110 (23%), Positives = 46/110 (41%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEPPXXXXXXXXXXXXXXTND 324
           W    T DG+ +Y+N     S W++P +LK++  +D+ ++EP                  
Sbjct: 437 WTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEP--------------IKEA 482

Query: 325 SDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDISKDSIP 474
           S+EP   + +    +EE V     E  E+E      +   A  ++   IP
Sbjct: 483 SEEPLPMETEEEDPKEEPVKEIKEEPKEEEMTEEEKAAQKAKPVATTPIP 532

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDLK 234
           W    T DG+V+Y+N   R S W +PD +K
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVK 166
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 (TATA box-binding
            protein-associated factor 2S) (Transcription factor
            CA150)
          Length = 1098

 Score =  204 bits (519), Expect = 3e-52
 Identities = 113/264 (42%), Positives = 150/264 (56%)
 Frame = +1

Query: 91   KARDKSKPISSTPVSGTPWCIVWTGDGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEP 270
            KA  K+KP+++ P+ GTPWC+VWTGD RVF++NP  RLS+WDRPDDL  R DVDKI+QEP
Sbjct: 516  KAAQKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 575

Query: 271  PXXXXXXXXXXXXXXTNDSDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDAN 450
            P              T         +  ++A +EE+   +  E NEDE   +   + D N
Sbjct: 576  PHKKGMEELKKLRHPTPTMLSIQKWQFSMSAIKEEQELME--EINEDEPVKAKKRKRDDN 633

Query: 451  DISKDSIPLSXXXXXXXXXXXXXXRALLPMDVRVAQFREMLIEKQVSAFSTWEKELHKIV 630
               KD I                 RA++P++ R+ QF++ML+E+ VSAFSTWEKELHKIV
Sbjct: 634  ---KD-IDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIV 689

Query: 631  FDPRYLLLVSKERKIAFENYVXXXXXXXXXXXXNQVRENKDLFKKLLKEASLNHXXXXXX 810
            FDPRYLLL  KERK  F+ YV            N++ + K+ FKK+++EA  N       
Sbjct: 690  FDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSE 749

Query: 811  XXXXXXXXERFKAIEKARDRETMF 882
                     RFKAIEK +DRE +F
Sbjct: 750  FAAKHAKDSRFKAIEKMKDREALF 773

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 24/110 (21%), Positives = 46/110 (41%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEPPXXXXXXXXXXXXXXTND 324
           W    T DG+ +Y+N     S W++P +LK++  +++ ++EP                  
Sbjct: 435 WTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEP--------------IKEP 480

Query: 325 SDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDISKDSIP 474
           S+EP   + +    +EE +     E  E+E      +   A  ++   IP
Sbjct: 481 SEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATAPIP 530

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDLK 234
           W    T DG+V+Y+N   R S W +PD +K
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVK 166
>sp|Q9R1C7|FNBP3_MOUSE Formin-binding protein 3 (Formin-binding protein 11) (FBP 11)
          Length = 953

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +1

Query: 559 FREMLIEKQVSAFSTWEKELHKIVFDPRYLLLVS-KERKIAFENYVXXXXXXXXXXXXNQ 735
           F+E+L EK+V + ++WE+ +  I+ DPRY  L    E+K AF  Y             ++
Sbjct: 396 FKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSK 455

Query: 736 VRENKDLFKKLLK 774
            +E K+ F++ L+
Sbjct: 456 YKEAKESFQRFLE 468

 Score = 37.4 bits (85), Expect = 0.058
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 166 DGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEPP 273
           DGR +Y+N   + S W++PDDLK  T  +++L + P
Sbjct: 153 DGRTYYYNTETKQSTWEKPDDLK--TPAEQLLSKCP 186
>sp|O75400|FNBP3_HUMAN Formin-binding protein 3 (Huntingtin yeast partner A)
           (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand
           associated factor 1) (NY-REN-6 antigen)
          Length = 957

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +1

Query: 559 FREMLIEKQVSAFSTWEKELHKIVFDPRYLLLVS-KERKIAFENYVXXXXXXXXXXXXNQ 735
           F+E+L EK+V + ++WE+ +  I+ DPRY  L    E+K AF  Y             ++
Sbjct: 400 FKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSK 459

Query: 736 VRENKDLFKKLLK 774
            +E K+ F++ L+
Sbjct: 460 YKEAKESFQRFLE 472

 Score = 37.4 bits (85), Expect = 0.058
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +1

Query: 166 DGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEPP 273
           DGR +Y+N   + S W++PDDLK  T  +++L + P
Sbjct: 153 DGRTYYYNTETKQSTWEKPDDLK--TPAEQLLSKCP 186
>sp|Q09685|HGP1_SCHPO Hyphal growth protein 1
          Length = 411

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDL-KD--------RTDVDKILQEPPXXXXXXXX 297
           W +V+T   R F+ N     S W+ P ++ KD        R  + K   +          
Sbjct: 95  WVVVFTKKNRYFFHNLKSHESYWEPPLEISKDLKILRLPIRKQISKDSSQSQNVDSGKTN 154

Query: 298 XXXXXXTNDSDEPPAKKQKINAGEEEKVAS-----DTSEENEDEKEGSSASQNDANDISK 462
                 +        +   +    EE V       + S+E EDE++  SA + +  +   
Sbjct: 155 HEEIHESRHLQTEIEEPSGLEESSEESVLYSEEFYEKSDEEEDEEKSHSAEELEFGE-ED 213

Query: 463 DSIPLSXXXXXXXXXXXXXXRALLPMDVRVAQFREMLIEKQVSAFSTWEKELHKIVFDPR 642
               L                  L  D     F E+L +K + A+  WE    K++ D R
Sbjct: 214 IMYQLQQLDDETVSYDIQEQATNLSTDDARRVFTELLKDKNIGAYQPWELVYPKLLDDDR 273

Query: 643 YLLLVSKE-RKIAFENY 690
           + +L S E RK  FE Y
Sbjct: 274 FYVLDSGERRKEVFEEY 290
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
          Length = 1359

 Score = 36.6 bits (83), Expect = 0.099
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +1

Query: 319 NDSDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDISKDS 468
           +D DE P+KK K   G ++K  S++  E+EDEKE   + +     + K+S
Sbjct: 186 SDEDEKPSKKSK--KGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKES 233

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 322 DSDEPPAKKQKINAGEEEK-VASDTSEENEDEKEGSSASQNDANDISK 462
           DSDE   +K K  + + +K  +S++SEE+E+E++   + +N    + K
Sbjct: 131 DSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKK 178
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 (WBP-4)
          Length = 398

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 118 SSTPVSGTPWCIVWTGDGRVFYFNPAKRLSVWDRPDDL----KDRTDVDKILQEPPXXXX 285
           S T  +G+ W    + DG  +Y+N    +S W++PD       D +   K  +E      
Sbjct: 172 SKTSHTGSVWVEGVSEDGHTYYYNTQTGVSTWEKPDGFVSSSNDNSQRGKHSEE------ 225

Query: 286 XXXXXXXXXXTNDSDEPPAKKQKINAGEEEKVASDTSEENEDEK 417
                      +DS++  ++ +  + G   K   +  EE+E EK
Sbjct: 226 ----ADSRASESDSEQEDSESEGQSPGTNLKRKGENDEESEKEK 265
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain 2B (hWALp4)
          Length = 1972

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 322 DSDEPPAK-KQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDIS 459
           DSD P +K  +  N  EEE    +  E++ED++   S S++D+N  S
Sbjct: 399 DSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSES 445
>sp|P33203|PRP40_YEAST Pre-mRNA processing protein PRP40
          Length = 583

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 3/216 (1%)
 Frame = +1

Query: 145 WCIVWTGDGRVFYFNPAKRLSVWDRPDDLKDRTDVDKILQEPPXXXXXXXXXXXXXXTND 324
           W    T DG+V+Y+NP  R + W  P   K    V+ I ++                T  
Sbjct: 45  WKAAKTADGKVYYYNPTTRETSWTIPAFEK---KVEPIAEQ-------------KHDTVS 88

Query: 325 SDEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDISKDSIPLSXXXXXXXX 504
             +    +  + AGE+++     +EE E +   +S   N      +++            
Sbjct: 89  HAQVNGNRIALTAGEKQEPGRTINEE-ESQYANNSKLLNVRRRTKEEA------------ 135

Query: 505 XXXXXXRALLPMDVRVAQFREMLIEKQVSAFSTWEKELHKI-VFDPRYLLLVSKE--RKI 675
                            +F  ML E QV +  ++ + + ++   DPRY ++      +K 
Sbjct: 136 ---------------EKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKE 180

Query: 676 AFENYVXXXXXXXXXXXXNQVRENKDLFKKLLKEAS 783
            FE Y+            N+  + K+ F+K+L+  S
Sbjct: 181 MFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNS 216
>sp|P18418|CRTC_RAT Calreticulin precursor (CRP55) (Calregulin) (HACBP) (ERp60) (CALBP)
           (Calcium-binding protein 3) (CABP3)
          Length = 416

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 328 DEPPAKKQKINAGEEEKVASDTSEENEDEKEGSSASQNDANDISKDSI 471
           +E   KK+K     E+K   D  +E+EDE++     + DA   +KD +
Sbjct: 369 EEEEDKKRKEEEEAEDKEDEDDRDEDEDEEDEKEEDEEDATGQAKDEL 416
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,916,009
Number of Sequences: 369166
Number of extensions: 1480120
Number of successful extensions: 6517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6159
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)