Planaria EST Database


DrC_02063

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02063
         (880 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54428|YRKA_BACSU  Hypothetical UPF0053 protein yrkA            31   4.0  
sp|O75897|ST1C2_HUMAN  Sulfotransferase 1C2 (SULT1C) (SULT1C#2)    31   4.0  
sp|Q9JT86|GCSP_NEIMA  Glycine dehydrogenase [decarboxylating...    30   6.8  
sp|P33418|LOS1_YEAST  Protein LOS1                                 30   8.9  
sp|Q95Q95|TOR_CAEEL  Target of rapamycin homolog (CeTOR) (Le...    30   8.9  
sp|Q44697|TRPE_BUCDN  Anthranilate synthase component I            30   8.9  
>sp|P54428|YRKA_BACSU Hypothetical UPF0053 protein yrkA
          Length = 434

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +3

Query: 546 IADNKRIPRRGEIGVTSEDIDSFESLGYVMSGSRHNRMEAVRIRKENQIYSADEKRILAA 725
           IA    IPRR  + ++SE  DS+E++  ++    + R   +   K++ I   + K  L+A
Sbjct: 215 IAKEIMIPRREIVAISSE--DSYETIVKIIKTESYTRYPVLNGDKDSIIGFINAKEFLSA 272

Query: 726 LNQTEMVKKEAENLEH 773
              T+   KE   LE+
Sbjct: 273 YIDTDQKIKEDFKLEN 288
>sp|O75897|ST1C2_HUMAN Sulfotransferase 1C2 (SULT1C) (SULT1C#2)
          Length = 302

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +3

Query: 393 FIESMKK--KHEVKNTDEFIGPQIPEGLIPKLPSHMDFG--KALLPGEGAAMAAYIADNK 560
           F E MKK  KHE++   EFIG ++ + ++ K+  +  F   K       +++ A I D+ 
Sbjct: 199 FYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHS 258

Query: 561 RIP--RRGEIG 587
             P  R+G +G
Sbjct: 259 ISPFMRKGAVG 269
>sp|Q9JT86|GCSP_NEIMA Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
           (Glycine cleavage system P-protein)
          Length = 950

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 426 KNTDEFIGPQIPEGLIPKLPSHMDFGKALLPGEGAAMAAYIADNKRI 566
           K+ DEF+G  +P+ +  ++PS +D  +AL   +  A    IA    I
Sbjct: 32  KSMDEFVGNTVPQSI--RMPSELDLPEALTEADALAKLKGIASKNMI 76
>sp|P33418|LOS1_YEAST Protein LOS1
          Length = 1100

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -2

Query: 708 FHLQNIFDFLF*YEQLPFCYDDYLTLHNPSFQMNQYLLMLHQFHLFSEFVYYQQYMQP*L 529
           ++LQ I+ FL   E    CY+  L + +   +    L  L+  +L +E  YY Q     +
Sbjct: 252 YYLQLIYKFLNLKETKISCYNCILAIISKKMKPMDKLAFLNMINLTNELTYYHQA----I 307

Query: 528 HLHPAAMLFQN 496
            ++P  + F N
Sbjct: 308 SMNPQIITFDN 318
>sp|Q95Q95|TOR_CAEEL Target of rapamycin homolog (CeTOR) (Lethal protein 363)
          Length = 2697

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 333 ISFLTFSLNETN*SDVFDEIFYFSLLFHC*YLCH*NIKDPVQAILP 196
           ISF++ ++ +T  SDV D  F F  LF   Y  H  +   ++AI+P
Sbjct: 462 ISFISAAIKKTTNSDVLDNYFTFLFLFVDAY--HEQVTTQIKAIIP 505
>sp|Q44697|TRPE_BUCDN Anthranilate synthase component I
          Length = 519

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 271 KNLIEDITLVRLIQRKSQKRNPKSPKEKSIHLLV*MKKNKTLLRV*KRNMKSKIQM 438
           KN +E I ++    R S +RN       S+ L    K  + +L + K N+K K+QM
Sbjct: 46  KNDLESIMIIDAALRISSERN------HSVQLTALSKNGENILSILKSNLKQKVQM 95
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,061,427
Number of Sequences: 369166
Number of extensions: 1852875
Number of successful extensions: 4957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4956
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)