Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F06
(880 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54428|YRKA_BACSU Hypothetical UPF0053 protein yrkA 31 4.0
sp|O75897|ST1C2_HUMAN Sulfotransferase 1C2 (SULT1C) (SULT1C#2) 31 4.0
sp|Q9JT86|GCSP_NEIMA Glycine dehydrogenase [decarboxylating... 30 6.8
sp|P33418|LOS1_YEAST Protein LOS1 30 8.9
sp|Q95Q95|TOR_CAEEL Target of rapamycin homolog (CeTOR) (Le... 30 8.9
sp|Q44697|TRPE_BUCDN Anthranilate synthase component I 30 8.9
>sp|P54428|YRKA_BACSU Hypothetical UPF0053 protein yrkA
Length = 434
Score = 31.2 bits (69), Expect = 4.0
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +3
Query: 546 IADNKRIPRRGEIGVTSEDIDSFESLGYVMSGSRHNRMEAVRIRKENQIYSADEKRILAA 725
IA IPRR + ++SE DS+E++ ++ + R + K++ I + K L+A
Sbjct: 215 IAKEIMIPRREIVAISSE--DSYETIVKIIKTESYTRYPVLNGDKDSIIGFINAKEFLSA 272
Query: 726 LNQTEMVKKEAENLEH 773
T+ KE LE+
Sbjct: 273 YIDTDQKIKEDFKLEN 288
>sp|O75897|ST1C2_HUMAN Sulfotransferase 1C2 (SULT1C) (SULT1C#2)
Length = 302
Score = 31.2 bits (69), Expect = 4.0
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 393 FIESMKK--KHEVKNTDEFIGPQIPEGLIPKLPSHMDFG--KALLPGEGAAMAAYIADNK 560
F E MKK KHE++ EFIG ++ + ++ K+ + F K +++ A I D+
Sbjct: 199 FYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHS 258
Query: 561 RIP--RRGEIG 587
P R+G +G
Sbjct: 259 ISPFMRKGAVG 269
>sp|Q9JT86|GCSP_NEIMA Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
(Glycine cleavage system P-protein)
Length = 950
Score = 30.4 bits (67), Expect = 6.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 426 KNTDEFIGPQIPEGLIPKLPSHMDFGKALLPGEGAAMAAYIADNKRI 566
K+ DEF+G +P+ + ++PS +D +AL + A IA I
Sbjct: 32 KSMDEFVGNTVPQSI--RMPSELDLPEALTEADALAKLKGIASKNMI 76
>sp|P33418|LOS1_YEAST Protein LOS1
Length = 1100
Score = 30.0 bits (66), Expect = 8.9
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -2
Query: 708 FHLQNIFDFLF*YEQLPFCYDDYLTLHNPSFQMNQYLLMLHQFHLFSEFVYYQQYMQP*L 529
++LQ I+ FL E CY+ L + + + L L+ +L +E YY Q +
Sbjct: 252 YYLQLIYKFLNLKETKISCYNCILAIISKKMKPMDKLAFLNMINLTNELTYYHQA----I 307
Query: 528 HLHPAAMLFQN 496
++P + F N
Sbjct: 308 SMNPQIITFDN 318
>sp|Q95Q95|TOR_CAEEL Target of rapamycin homolog (CeTOR) (Lethal protein 363)
Length = 2697
Score = 30.0 bits (66), Expect = 8.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 333 ISFLTFSLNETN*SDVFDEIFYFSLLFHC*YLCH*NIKDPVQAILP 196
ISF++ ++ +T SDV D F F LF Y H + ++AI+P
Sbjct: 462 ISFISAAIKKTTNSDVLDNYFTFLFLFVDAY--HEQVTTQIKAIIP 505
>sp|Q44697|TRPE_BUCDN Anthranilate synthase component I
Length = 519
Score = 30.0 bits (66), Expect = 8.9
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 271 KNLIEDITLVRLIQRKSQKRNPKSPKEKSIHLLV*MKKNKTLLRV*KRNMKSKIQM 438
KN +E I ++ R S +RN S+ L K + +L + K N+K K+QM
Sbjct: 46 KNDLESIMIIDAALRISSERN------HSVQLTALSKNGENILSILKSNLKQKVQM 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,061,427
Number of Sequences: 369166
Number of extensions: 1852875
Number of successful extensions: 4957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4956
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)