Planaria EST Database


DrC_02061

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02061
         (880 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38354|YB8A_YEAST  Hypothetical protein YBR285W                 37   0.095
sp|Q8RKJ2|TARL_BACSU  Putative polyribitolphosphotransferase...    36   0.16 
sp|Q9BX63|FANCJ_HUMAN  Fanconi anemia group J protein (Prote...    35   0.21 
sp|P54637|PTP3_DICDI  Tyrosine-protein phosphatase 3 (Protei...    34   0.47 
sp|O79417|COX2_BRALA  Cytochrome c oxidase subunit 2 (Cytoch...    34   0.61 
sp|O47428|COX2_BRAFL  Cytochrome c oxidase subunit 2 (Cytoch...    34   0.61 
sp|P54197|CHI2_COCIM  Endochitinase 2 precursor                    34   0.61 
sp|Q661N6|BMA1_BORGA  Basic membrane protein A1 precursor (I...    33   0.80 
sp|P13134|KEX2_YEAST  Kexin precursor (KEX2 protease) (Prote...    33   1.0  
sp|O31357|BMPA2_BORGA  Basic membrane protein A2 precursor (...    33   1.0  
>sp|P38354|YB8A_YEAST Hypothetical protein YBR285W
          Length = 144

 Score = 36.6 bits (83), Expect = 0.095
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 7/153 (4%)
 Frame = +1

Query: 61  ENVFSFKKMKLSHFKIKDPLLLSLEISRKYSQNNNSYLNVYSSFQNNDTPIDFTIIHSSS 240
           +++FSFKK + S  +I             Y   NN ++N+ S     D  ++  I H   
Sbjct: 11  DSLFSFKKQEPSPIEII------------YCNENNGFINIKSLESPTDDSMEADISHREM 58

Query: 241 TPYSTKHRNHSRNETFNKSGT-------FECKSLIMQTENVKSESVGTASQNFTNKTFNL 399
               T++RN+      +K G         E K  ++  E+       T  QN    T++ 
Sbjct: 59  ATILTRNRNNLGKVAIDKKGVNNHCIDLNELKKGLVANEHKLDNDNSTRHQN----TYSP 114

Query: 400 EETKEMKSIDIDLSDKSNLLSPCSQINSDIHDK 498
           E++ E    D    DK + +  CS   S +  K
Sbjct: 115 EDSVEFDRFD----DKQSRILKCSTRRSYLRYK 143
>sp|Q8RKJ2|TARL_BACSU Putative polyribitolphosphotransferase (Polyribitol phosphate
           polymerase)
          Length = 619

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
 Frame = +1

Query: 115 PLLLSLEISRKYSQNNNSYLNVYSSFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNK 294
           PL    ++ ++    NN  L  +++    D P+D   I +S+ P + K    S+   F+K
Sbjct: 77  PLQKEDQVRKRLLLVNNGVL--FTAVSLRDIPVDQLSIDTSNVPGAYKWAGFSQQINFSK 134

Query: 295 --------SGTFECKSLI--MQTENVKSESVGTASQNFTNKTFNLEETKEMKSIDIDLSD 444
                    G ++    I  +  +NVK + V T   N +N   N     +M+        
Sbjct: 135 LMNDKPLPQGEYKLFLEIEAVDDQNVKHQEVHTVG-NVSNFLSNDVYATKMEFHSAKKLM 193

Query: 445 KSNLLSPCSQINSDIHDKTVDLASVKLNKLAPSKLQKPIENGIVPEKSNRLNKKI 609
           K NL+     +N D  +KT++L+  KL ++ PS L+  ++ G   +++NR  +K+
Sbjct: 194 KFNLI-----VNYDEGEKTINLSCNKLQEIDPSLLE--LDTG---KEANRFIRKL 238
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein (Protein FACJ) (BRCA1-interacting
            protein C-terminal helicase 1) (BRCA1-interacting protein
            1) (BRCA1-associated C-terminal helicase 1)
          Length = 1249

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
 Frame = +1

Query: 1    DWLMSVNADFNDEDDGNFVIENVFSFKKMKLSHFKIKDPLLLSL-EISRKYSQNNNSYLN 177
            DW   +  D    ++ +  I  +  + + ++ H    +  L SL E S+K+ +  N  + 
Sbjct: 838  DWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIK 897

Query: 178  VYSSFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGT------FECKSLIMQTEN 339
              ++ Q+N++ ++ T +  S+ PY  +  +H   E F +          +C  +I +   
Sbjct: 898  DRTNIQDNESTLEVTSLKYSTPPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSP 957

Query: 340  VKSESVGTASQNFTNKTFNLEETKEMKSIDIDLS 441
            + S  +   S+   N    LEE  + + I I  S
Sbjct: 958  LPSSII---SRKEKNDPVFLEEAGKAEKIVISRS 988
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
           phosphohydrolase 3)
          Length = 989

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
 Frame = +1

Query: 19  NADFNDEDDGNFVIENVFSFKKMKLSHFKIKDPLLLSLEISRKYSQNNNSYLNVYSSFQN 198
           N   N+ ++ N   ++ F    +KLS+  I         I    + NNN+  N  ++  N
Sbjct: 105 NTTTNNNNNNNNNNDDKFDTNALKLSNTMI---------IKNNNNNNNNNNNNNNNNNNN 155

Query: 199 NDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGTFECKSLIMQTENVKSESVGTAS--- 369
           N+   +    ++++   +  + N++ N   N +   E     +Q +N  +  V + +   
Sbjct: 156 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNIEINVPSIQFDNEPAMEVDSVAPLN 215

Query: 370 --QNFTNKTFNLEETKEMKSIDIDLSDKSNLLSPCSQINSDIHDKTVDLASVKLNKLAPS 543
              N T  T  +  TK + + +I L   + L +  S  +S +   T    +   + L P 
Sbjct: 216 VPSNHTRTTLAMHNTKSLSTSNIGL--LNILPNQQSSSSSSLSSTTTTTTTTSSSLLMPQ 273

Query: 544 KL 549
            L
Sbjct: 274 SL 275
>sp|O79417|COX2_BRALA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 239

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 218 KSIGVSLFWKDEYTFRYELLF*EYFLDISKESNNGSLILKWDNFIFLKEKT 66
           KS+G   +W  EYT  Y++ F  Y L +   S   + +L+ DN + L   T
Sbjct: 98  KSVGHQWYWSYEYTDYYDIEFDSYMLPLGDLSKGDARLLEVDNRVVLPVDT 148
>sp|O47428|COX2_BRAFL Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 230

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 218 KSIGVSLFWKDEYTFRYELLF*EYFLDISKESNNGSLILKWDNFIFLKEKT 66
           KS+G   +W  EYT  Y++ F  Y L +   S   + +L+ DN + L   T
Sbjct: 98  KSVGHQWYWSYEYTDYYDIEFDSYMLPLGDLSKGDARLLEVDNRVVLPVDT 148
>sp|P54197|CHI2_COCIM Endochitinase 2 precursor
          Length = 860

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 24/83 (28%), Positives = 41/83 (49%)
 Frame = +1

Query: 187 SFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGTFECKSLIMQTENVKSESVGTA 366
           S ++  T    T  HS+S P ST  R+ S      +S   + +S+ + T +  +ES+ T 
Sbjct: 550 STKSAPTETGTTSEHSTSMPVST--RSASTETVITRSQNSDSQSMTVSTRSPSTESITTR 607

Query: 367 SQNFTNKTFNLEETKEMKSIDID 435
           SQ   ++TF+       KS+ +D
Sbjct: 608 SQGSPSETFS------TKSVPVD 624
>sp|Q661N6|BMA1_BORGA Basic membrane protein A1 precursor (Immunodominant antigen P39)
          Length = 337

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
 Frame = -3

Query: 878 SVIVCRRLGSNGGII------------RVLTSFKLDIGATVSLGNVFENDFFTTDLFEGG 735
           ++ V + LGS   II             ++TS   D+G ++   N+F +++  T+ FEGG
Sbjct: 225 AIEVAKELGSGHYIIGVDGDQSYLAPNNIITSATKDVGRSL---NIFTSNYLKTNTFEGG 281

Query: 734 -LINEGALGGSIGNFNN 687
            LIN G   G +G   N
Sbjct: 282 RLINYGLKEGVVGFIKN 298
>sp|P13134|KEX2_YEAST Kexin precursor (KEX2 protease) (Proteinase YSCF)
          Length = 814

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +1

Query: 382 NKTFNLEETKEMKSIDIDLSDKSNLLSPCSQINSDIHDKTVDLASVKLNKLAPSKLQKPI 561
           N T  + E +E++  D DLSD+ +L S  S  N D  + T+D      N  +    QK  
Sbjct: 730 NGTSGITEPEEVEDFDFDLSDEDHLASLSSSENGDA-EHTIDSVLTNENPFSDPIKQKFP 788

Query: 562 ENGIVPEKSNRLNK 603
            +      SN+L +
Sbjct: 789 NDANAESASNKLQE 802
>sp|O31357|BMPA2_BORGA Basic membrane protein A2 precursor (Immunodominant antigen P39)
          Length = 337

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
 Frame = -3

Query: 878 SVIVCRRLGSNGGII------------RVLTSFKLDIGATVSLGNVFENDFFTTDLFEGG 735
           ++ V + LGS   II             ++TS   D+G ++   N+F +++  T+ FEGG
Sbjct: 225 AIEVAKELGSGHYIIGVDEDQSYLAPNNIITSATKDVGRSL---NIFTSNYLKTNTFEGG 281

Query: 734 -LINEGALGGSIGNFNN 687
            LIN G   G +G   N
Sbjct: 282 RLINYGLKEGVVGFVKN 298
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.311    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,013,117
Number of Sequences: 369166
Number of extensions: 1907093
Number of successful extensions: 4565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4549
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)