Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E01
(880 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38354|YB8A_YEAST Hypothetical protein YBR285W 37 0.095
sp|Q8RKJ2|TARL_BACSU Putative polyribitolphosphotransferase... 36 0.16
sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein (Prote... 35 0.21
sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protei... 34 0.47
sp|O79417|COX2_BRALA Cytochrome c oxidase subunit 2 (Cytoch... 34 0.61
sp|O47428|COX2_BRAFL Cytochrome c oxidase subunit 2 (Cytoch... 34 0.61
sp|P54197|CHI2_COCIM Endochitinase 2 precursor 34 0.61
sp|Q661N6|BMA1_BORGA Basic membrane protein A1 precursor (I... 33 0.80
sp|P13134|KEX2_YEAST Kexin precursor (KEX2 protease) (Prote... 33 1.0
sp|O31357|BMPA2_BORGA Basic membrane protein A2 precursor (... 33 1.0
>sp|P38354|YB8A_YEAST Hypothetical protein YBR285W
Length = 144
Score = 36.6 bits (83), Expect = 0.095
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 7/153 (4%)
Frame = +1
Query: 61 ENVFSFKKMKLSHFKIKDPLLLSLEISRKYSQNNNSYLNVYSSFQNNDTPIDFTIIHSSS 240
+++FSFKK + S +I Y NN ++N+ S D ++ I H
Sbjct: 11 DSLFSFKKQEPSPIEII------------YCNENNGFINIKSLESPTDDSMEADISHREM 58
Query: 241 TPYSTKHRNHSRNETFNKSGT-------FECKSLIMQTENVKSESVGTASQNFTNKTFNL 399
T++RN+ +K G E K ++ E+ T QN T++
Sbjct: 59 ATILTRNRNNLGKVAIDKKGVNNHCIDLNELKKGLVANEHKLDNDNSTRHQN----TYSP 114
Query: 400 EETKEMKSIDIDLSDKSNLLSPCSQINSDIHDK 498
E++ E D DK + + CS S + K
Sbjct: 115 EDSVEFDRFD----DKQSRILKCSTRRSYLRYK 143
>sp|Q8RKJ2|TARL_BACSU Putative polyribitolphosphotransferase (Polyribitol phosphate
polymerase)
Length = 619
Score = 35.8 bits (81), Expect = 0.16
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Frame = +1
Query: 115 PLLLSLEISRKYSQNNNSYLNVYSSFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNK 294
PL ++ ++ NN L +++ D P+D I +S+ P + K S+ F+K
Sbjct: 77 PLQKEDQVRKRLLLVNNGVL--FTAVSLRDIPVDQLSIDTSNVPGAYKWAGFSQQINFSK 134
Query: 295 --------SGTFECKSLI--MQTENVKSESVGTASQNFTNKTFNLEETKEMKSIDIDLSD 444
G ++ I + +NVK + V T N +N N +M+
Sbjct: 135 LMNDKPLPQGEYKLFLEIEAVDDQNVKHQEVHTVG-NVSNFLSNDVYATKMEFHSAKKLM 193
Query: 445 KSNLLSPCSQINSDIHDKTVDLASVKLNKLAPSKLQKPIENGIVPEKSNRLNKKI 609
K NL+ +N D +KT++L+ KL ++ PS L+ ++ G +++NR +K+
Sbjct: 194 KFNLI-----VNYDEGEKTINLSCNKLQEIDPSLLE--LDTG---KEANRFIRKL 238
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein (Protein FACJ) (BRCA1-interacting
protein C-terminal helicase 1) (BRCA1-interacting protein
1) (BRCA1-associated C-terminal helicase 1)
Length = 1249
Score = 35.4 bits (80), Expect = 0.21
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Frame = +1
Query: 1 DWLMSVNADFNDEDDGNFVIENVFSFKKMKLSHFKIKDPLLLSL-EISRKYSQNNNSYLN 177
DW + D ++ + I + + + ++ H + L SL E S+K+ + N +
Sbjct: 838 DWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIK 897
Query: 178 VYSSFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGT------FECKSLIMQTEN 339
++ Q+N++ ++ T + S+ PY + +H E F + +C +I +
Sbjct: 898 DRTNIQDNESTLEVTSLKYSTPPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSP 957
Query: 340 VKSESVGTASQNFTNKTFNLEETKEMKSIDIDLS 441
+ S + S+ N LEE + + I I S
Sbjct: 958 LPSSII---SRKEKNDPVFLEEAGKAEKIVISRS 988
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
phosphohydrolase 3)
Length = 989
Score = 34.3 bits (77), Expect = 0.47
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
Frame = +1
Query: 19 NADFNDEDDGNFVIENVFSFKKMKLSHFKIKDPLLLSLEISRKYSQNNNSYLNVYSSFQN 198
N N+ ++ N ++ F +KLS+ I I + NNN+ N ++ N
Sbjct: 105 NTTTNNNNNNNNNNDDKFDTNALKLSNTMI---------IKNNNNNNNNNNNNNNNNNNN 155
Query: 199 NDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGTFECKSLIMQTENVKSESVGTAS--- 369
N+ + ++++ + + N++ N N + E +Q +N + V + +
Sbjct: 156 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNIEINVPSIQFDNEPAMEVDSVAPLN 215
Query: 370 --QNFTNKTFNLEETKEMKSIDIDLSDKSNLLSPCSQINSDIHDKTVDLASVKLNKLAPS 543
N T T + TK + + +I L + L + S +S + T + + L P
Sbjct: 216 VPSNHTRTTLAMHNTKSLSTSNIGL--LNILPNQQSSSSSSLSSTTTTTTTTSSSLLMPQ 273
Query: 544 KL 549
L
Sbjct: 274 SL 275
>sp|O79417|COX2_BRALA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 239
Score = 33.9 bits (76), Expect = 0.61
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 218 KSIGVSLFWKDEYTFRYELLF*EYFLDISKESNNGSLILKWDNFIFLKEKT 66
KS+G +W EYT Y++ F Y L + S + +L+ DN + L T
Sbjct: 98 KSVGHQWYWSYEYTDYYDIEFDSYMLPLGDLSKGDARLLEVDNRVVLPVDT 148
>sp|O47428|COX2_BRAFL Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 230
Score = 33.9 bits (76), Expect = 0.61
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 218 KSIGVSLFWKDEYTFRYELLF*EYFLDISKESNNGSLILKWDNFIFLKEKT 66
KS+G +W EYT Y++ F Y L + S + +L+ DN + L T
Sbjct: 98 KSVGHQWYWSYEYTDYYDIEFDSYMLPLGDLSKGDARLLEVDNRVVLPVDT 148
>sp|P54197|CHI2_COCIM Endochitinase 2 precursor
Length = 860
Score = 33.9 bits (76), Expect = 0.61
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +1
Query: 187 SFQNNDTPIDFTIIHSSSTPYSTKHRNHSRNETFNKSGTFECKSLIMQTENVKSESVGTA 366
S ++ T T HS+S P ST R+ S +S + +S+ + T + +ES+ T
Sbjct: 550 STKSAPTETGTTSEHSTSMPVST--RSASTETVITRSQNSDSQSMTVSTRSPSTESITTR 607
Query: 367 SQNFTNKTFNLEETKEMKSIDID 435
SQ ++TF+ KS+ +D
Sbjct: 608 SQGSPSETFS------TKSVPVD 624
>sp|Q661N6|BMA1_BORGA Basic membrane protein A1 precursor (Immunodominant antigen P39)
Length = 337
Score = 33.5 bits (75), Expect = 0.80
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Frame = -3
Query: 878 SVIVCRRLGSNGGII------------RVLTSFKLDIGATVSLGNVFENDFFTTDLFEGG 735
++ V + LGS II ++TS D+G ++ N+F +++ T+ FEGG
Sbjct: 225 AIEVAKELGSGHYIIGVDGDQSYLAPNNIITSATKDVGRSL---NIFTSNYLKTNTFEGG 281
Query: 734 -LINEGALGGSIGNFNN 687
LIN G G +G N
Sbjct: 282 RLINYGLKEGVVGFIKN 298
>sp|P13134|KEX2_YEAST Kexin precursor (KEX2 protease) (Proteinase YSCF)
Length = 814
Score = 33.1 bits (74), Expect = 1.0
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 382 NKTFNLEETKEMKSIDIDLSDKSNLLSPCSQINSDIHDKTVDLASVKLNKLAPSKLQKPI 561
N T + E +E++ D DLSD+ +L S S N D + T+D N + QK
Sbjct: 730 NGTSGITEPEEVEDFDFDLSDEDHLASLSSSENGDA-EHTIDSVLTNENPFSDPIKQKFP 788
Query: 562 ENGIVPEKSNRLNK 603
+ SN+L +
Sbjct: 789 NDANAESASNKLQE 802
>sp|O31357|BMPA2_BORGA Basic membrane protein A2 precursor (Immunodominant antigen P39)
Length = 337
Score = 33.1 bits (74), Expect = 1.0
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Frame = -3
Query: 878 SVIVCRRLGSNGGII------------RVLTSFKLDIGATVSLGNVFENDFFTTDLFEGG 735
++ V + LGS II ++TS D+G ++ N+F +++ T+ FEGG
Sbjct: 225 AIEVAKELGSGHYIIGVDEDQSYLAPNNIITSATKDVGRSL---NIFTSNYLKTNTFEGG 281
Query: 734 -LINEGALGGSIGNFNN 687
LIN G G +G N
Sbjct: 282 RLINYGLKEGVVGFVKN 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.311 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,013,117
Number of Sequences: 369166
Number of extensions: 1907093
Number of successful extensions: 4565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4549
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)