Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02054
(340 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O77459|KEN_DROME Probable transcription factor Ken (Ken ... 29 3.0
sp|Q9Y6R4|M3K4_HUMAN Mitogen-activated protein kinase kinas... 29 3.0
sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan branching enzyme IIB,... 28 8.6
>sp|O77459|KEN_DROME Probable transcription factor Ken (Ken and Barbie protein)
Length = 601
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 153 DSFGESSKIAKYNPATDQNDNPQFSAIAGDLNNWKQTASDSDDFLSKNNQAIKSKTKI 326
DS ES A ++ A + NDN + +A D DD K+N++ K +I
Sbjct: 164 DSVDESRNAADFSSAFNSNDNCESAAECERSGGHNNKEEDEDDCTHKDNKSDKDTDEI 221
>sp|Q9Y6R4|M3K4_HUMAN Mitogen-activated protein kinase kinase kinase 4 (MAPK/ERK kinase
kinase 4) (MEK kinase 4) (MEKK 4) (MAP three kinase 1)
Length = 1607
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 274 ESDAVCFQLFKSPAIAEN*GLSF*SVAGLYLAIFEDSPKESALPLC 137
E D + Q + I G V GLYLAI +SP+ +P C
Sbjct: 1112 EDDFLSLQALMNECIGHVIGKPHSPVTGLYLAIHRNSPRPMKVPRC 1157
>sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan branching enzyme IIB, chloroplast precursor
(Starch branching enzyme IIB) (Q-enzyme)
Length = 799
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 135 EHSGSADSFGESSKIAKYNPATDQNDNPQFS------AIAGDLNNWKQTASDSDDFLSKN 296
EH G ++F S + +N + + +++ A+ GD+NNW A D +SKN
Sbjct: 151 EHEGGLEAFSRSYEKFGFNASAEGITYREWAPGAFSAALVGDVNNWDPNA----DRMSKN 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,906,974
Number of Sequences: 369166
Number of extensions: 525751
Number of successful extensions: 1297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)