Planaria EST Database


DrC_02043

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02043
         (879 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7A382|CLFB_STAAN  Clumping factor B precursor (Fibrinoge...    41   0.005
sp|Q5HCR7|CLFB_STAAC  Clumping factor B precursor (Fibrinoge...    41   0.005
sp|Q6GDH2|CLFB_STAAR  Clumping factor B precursor (Fibrinoge...    36   0.12 
sp|P47179|DAN4_YEAST  Cell wall protein DAN4 precursor             34   0.47 
sp|O74851|ADG3_SCHPO  Protein adg3 precursor                       34   0.61 
sp|Q9UMX0|UBQL1_HUMAN  Ubiquilin-1 (Protein linking IAP with...    33   0.80 
sp|Q9NZW4|DSPP_HUMAN  Dentin sialophosphoprotein precursor [...    33   0.80 
sp|Q49413|HMW1_MYCGE  Cytadherence high molecular weight pro...    33   0.80 
sp|P32323|AGA1_YEAST  A-agglutinin attachment subunit precursor    33   1.4  
sp|Q10187|UCP6_SCHPO  UBA-domain containing protein 6              33   1.4  
>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
 sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 877

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
 Frame = +1

Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
           ++SN+ ++ S NNAS         A   + +   T  L+ T  D   +  + N +     
Sbjct: 46  EQSNDTTQSSKNNAS---------ADSEKNNMIETPQLNTTANDTSDISANTNSA----- 91

Query: 415 SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLK 594
           + D  + P+ T ++  T+        TP+PT  +N       Q+     + N +  +   
Sbjct: 92  NVDSTTKPMSTQTSNTTTTEPASTNETPQPTAIKNQATAAKMQDQTVPQEANSQVDNKTT 151

Query: 595 ND-QSAGRGSSAPPSRNLNFTLSQP 666
           ND  S    S    S+ L+   S P
Sbjct: 152 NDANSIATNSELKNSQTLDLPQSSP 176
>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 913

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
 Frame = +1

Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
           ++SN+ ++ S NNAS         A   + +   T  L+ T  D   +  + N +     
Sbjct: 46  EQSNDTTQSSKNNAS---------ADSEKNNMIETPQLNTTANDTSDISANTNSA----- 91

Query: 415 SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLK 594
           + D  + P+ T ++  T+        TP+PT  +N       Q+     + N +  +   
Sbjct: 92  NVDSTTKPMSTQTSNTTTTEPASTNETPQPTAIKNQATAAKMQDQTVPQEANSQVDNKTT 151

Query: 595 ND-QSAGRGSSAPPSRNLNFTLSQP 666
           ND  S    S    S+ L+   S P
Sbjct: 152 NDANSIATNSELKNSQTLDLPQSSP 176
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
           (Fibrinogen receptor B)
          Length = 873

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
 Frame = +1

Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
           ++SN+ ++ S NNAS         A   + +   T  L+ T  D   +  + N       
Sbjct: 46  EQSNDTTQSSKNNAS---------ADSEKNNTIETPQLNTTANDTSDISANTN------- 89

Query: 415 SSDQISSPIKTNSTKPTSISNFKPIST---PKPTTFQNSTRGRSKQNYNTAIDKNFKFKH 585
            S  + S  KT ST+ ++ +  +P ST   P+PT  ++       Q+     + N +  +
Sbjct: 90  -SANVDSTAKTMSTQTSNTTTTEPASTNETPQPTAIKDQATAAKMQDQTVPQEANSQVDN 148

Query: 586 TLKND 600
              ND
Sbjct: 149 KTTND 153
>sp|P47179|DAN4_YEAST Cell wall protein DAN4 precursor
          Length = 1161

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
 Frame = +1

Query: 325 SCSPTLSLDITTEDEDPLPNSKNDSIFYFQSSDQISSPIKTNSTKPTSIS-NFKPISTPK 501
           S +PT S   TT        +   S     S+   +S   T ST PT+ S +  P ++  
Sbjct: 204 STTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTT 263

Query: 502 PTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKD 681
           PTT   ST   +     T+         T     S    SSA  S  ++ T +       
Sbjct: 264 PTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSSASASSVISTTAT------- 316

Query: 682 MCKNSNYFAS-WLPAVN-FNSDLKSGSQSTANQF 777
               S  FAS   PA +  ++D  + S ST N F
Sbjct: 317 ---TSTTFASLTTPATSTASTDHTTSSVSTTNAF 347
>sp|O74851|ADG3_SCHPO Protein adg3 precursor
          Length = 1131

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
 Frame = +1

Query: 217  SAVVLPDRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKND 396
            S   L   S  +S  SV+ + +P       A       S +LS   ++     +P++ + 
Sbjct: 528  STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSS 587

Query: 397  SIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFK 576
                  SSD  S  + + +   T+ S  + +STP   +   S  G S  N N+    + +
Sbjct: 588  YEVASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQ 647

Query: 577  FKHT----LKNDQSAGRGSS-APPSRNLNFTLSQPDAS 675
               T    +   QS    SS A  S  +++T S  D+S
Sbjct: 648  TTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSS 685
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
           (hPLIC-1)
          Length = 589

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
 Frame = +1

Query: 358 TEDEDPLPNSKNDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRS 537
           TE+ DPLPN      +  Q+S   S+   T ST   +  +    ++ + TT  N   G  
Sbjct: 314 TENRDPLPNP-----WAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVG 368

Query: 538 KQNYNTAIDKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQ-PDASKDMCKNSNYFA 708
              +NT   ++   +   +N Q      SAP  R++  +LSQ PD +  M  N+  FA
Sbjct: 369 ASMFNTPGMQSL-LQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFA 425
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
            (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
          Length = 1253

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 11/188 (5%)
 Frame = +1

Query: 235  DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSK-------- 390
            D SN NS DS ++ S  + D  D +     S S   S    + D     +S         
Sbjct: 723  DSSNSNSSDSDSSNSSDSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNS 782

Query: 391  ---NDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAI 561
               NDS     SSD  +S   +NS+  +  S+     +   +   NS+      N + + 
Sbjct: 783  SDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSS 842

Query: 562  DKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKDMCKNSNYFASWLPAVNFNSD 741
            D +        +D S    S+   S N + +    D+S     + +  +S     + +SD
Sbjct: 843  DSSD------SSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSNESSNSSD 896

Query: 742  LKSGSQST 765
                S S+
Sbjct: 897  SSDSSNSS 904

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
 Frame = +1

Query: 235  DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
            D S+ +S DS N++     D  D +    +S     S D  + D D   +S +DS     
Sbjct: 548  DSSDSDSSDSSNSS-----DSSDSSDS--DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSN 600

Query: 415  SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNT--------AIDKN 570
            SSD   S   ++S+  +  S+ K  S+   +   +S       + N+        + D +
Sbjct: 601  SSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSS 660

Query: 571  FKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKDMCKNSNYFASWLPAVNFNSDLKS 750
                 +  +D S    SS+    + +   S    S D   +SN   S   + + +SD   
Sbjct: 661  NSSNSSDSSDSSDSSDSSSSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSD 720

Query: 751  GSQSTANQFRNCD 789
             S S+ +   + D
Sbjct: 721  SSDSSNSNSSDSD 733
>sp|Q49413|HMW1_MYCGE Cytadherence high molecular weight protein 1 (Cytadherence
           accessory protein 1)
          Length = 1139

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)
 Frame = +1

Query: 244 NENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQSSD 423
           +EN+KD+ NN      D L+       S S T S D+  E       SK++ I  ++   
Sbjct: 399 SENNKDATNN------DSLNSEFIQLNSNSETASDDVHYE-------SKSEPIHDYKFGS 445

Query: 424 QISSPIKTNS--TKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKN 597
            +S     NS  ++P   ++     T     F++ +    +  Y+  I +N + K TL  
Sbjct: 446 DLSQSNSNNSLESEPVKFNS----ETAPDAHFESQSEPVDQVQYD--IYQNEELKPTLDQ 499

Query: 598 DQSAGRGSSAPPSRNLNF------TLSQPDASKDMCKNSNYFA----SWLPAVNFNSDL 744
             S    +  P   N  F       + QP++  D   + ++FA    S   + +F+SDL
Sbjct: 500 PSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQPESTTDSYSFDSDL 558
>sp|P32323|AGA1_YEAST A-agglutinin attachment subunit precursor
          Length = 725

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 32/145 (22%), Positives = 57/145 (39%)
 Frame = +1

Query: 241 SNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQSS 420
           S   S  S +++S  T            S SP+     +T     L ++ + S    QSS
Sbjct: 197 STSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPS-----STSTSSSLTSTSSSSTSTSQSS 251

Query: 421 DQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKND 600
              SS   + ST P+S S     ++  P++   S    S  +Y+T+   +          
Sbjct: 252 TSTSS--SSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSL-------TS 302

Query: 601 QSAGRGSSAPPSRNLNFTLSQPDAS 675
            S    S++P S +++ T +   +S
Sbjct: 303 SSPTLASTSPSSTSISSTFTDSTSS 327
>sp|Q10187|UCP6_SCHPO UBA-domain containing protein 6
          Length = 612

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +1

Query: 379 PNSKNDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTP 498
           PN++ DS F    S        TNS KPT I NFKP STP
Sbjct: 240 PNAEFDSTFCSTLSSL------TNSEKPTYIFNFKPNSTP 273
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.128    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,416,765
Number of Sequences: 369166
Number of extensions: 1637331
Number of successful extensions: 4810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4791
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)