Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_A01
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinoge... 41 0.005
sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinoge... 41 0.005
sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinoge... 36 0.12
sp|P47179|DAN4_YEAST Cell wall protein DAN4 precursor 34 0.47
sp|O74851|ADG3_SCHPO Protein adg3 precursor 34 0.61
sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with... 33 0.80
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 33 0.80
sp|Q49413|HMW1_MYCGE Cytadherence high molecular weight pro... 33 0.80
sp|P32323|AGA1_YEAST A-agglutinin attachment subunit precursor 33 1.4
sp|Q10187|UCP6_SCHPO UBA-domain containing protein 6 33 1.4
>sp|Q7A382|CLFB_STAAN Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
sp|Q99R07|CLFB_STAAM Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 877
Score = 40.8 bits (94), Expect = 0.005
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Frame = +1
Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
++SN+ ++ S NNAS A + + T L+ T D + + N +
Sbjct: 46 EQSNDTTQSSKNNAS---------ADSEKNNMIETPQLNTTANDTSDISANTNSA----- 91
Query: 415 SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLK 594
+ D + P+ T ++ T+ TP+PT +N Q+ + N + +
Sbjct: 92 NVDSTTKPMSTQTSNTTTTEPASTNETPQPTAIKNQATAAKMQDQTVPQEANSQVDNKTT 151
Query: 595 ND-QSAGRGSSAPPSRNLNFTLSQP 666
ND S S S+ L+ S P
Sbjct: 152 NDANSIATNSELKNSQTLDLPQSSP 176
>sp|Q5HCR7|CLFB_STAAC Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 913
Score = 40.8 bits (94), Expect = 0.005
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Frame = +1
Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
++SN+ ++ S NNAS A + + T L+ T D + + N +
Sbjct: 46 EQSNDTTQSSKNNAS---------ADSEKNNMIETPQLNTTANDTSDISANTNSA----- 91
Query: 415 SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLK 594
+ D + P+ T ++ T+ TP+PT +N Q+ + N + +
Sbjct: 92 NVDSTTKPMSTQTSNTTTTEPASTNETPQPTAIKNQATAAKMQDQTVPQEANSQVDNKTT 151
Query: 595 ND-QSAGRGSSAPPSRNLNFTLSQP 666
ND S S S+ L+ S P
Sbjct: 152 NDANSIATNSELKNSQTLDLPQSSP 176
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 873
Score = 36.2 bits (82), Expect = 0.12
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Frame = +1
Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
++SN+ ++ S NNAS A + + T L+ T D + + N
Sbjct: 46 EQSNDTTQSSKNNAS---------ADSEKNNTIETPQLNTTANDTSDISANTN------- 89
Query: 415 SSDQISSPIKTNSTKPTSISNFKPIST---PKPTTFQNSTRGRSKQNYNTAIDKNFKFKH 585
S + S KT ST+ ++ + +P ST P+PT ++ Q+ + N + +
Sbjct: 90 -SANVDSTAKTMSTQTSNTTTTEPASTNETPQPTAIKDQATAAKMQDQTVPQEANSQVDN 148
Query: 586 TLKND 600
ND
Sbjct: 149 KTTND 153
>sp|P47179|DAN4_YEAST Cell wall protein DAN4 precursor
Length = 1161
Score = 34.3 bits (77), Expect = 0.47
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Frame = +1
Query: 325 SCSPTLSLDITTEDEDPLPNSKNDSIFYFQSSDQISSPIKTNSTKPTSIS-NFKPISTPK 501
S +PT S TT + S S+ +S T ST PT+ S + P ++
Sbjct: 204 STTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTT 263
Query: 502 PTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKD 681
PTT ST + T+ T S SSA S ++ T +
Sbjct: 264 PTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSSASASSVISTTAT------- 316
Query: 682 MCKNSNYFAS-WLPAVN-FNSDLKSGSQSTANQF 777
S FAS PA + ++D + S ST N F
Sbjct: 317 ---TSTTFASLTTPATSTASTDHTTSSVSTTNAF 347
>sp|O74851|ADG3_SCHPO Protein adg3 precursor
Length = 1131
Score = 33.9 bits (76), Expect = 0.61
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Frame = +1
Query: 217 SAVVLPDRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKND 396
S L S +S SV+ + +P A S +LS ++ +P++ +
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSS 587
Query: 397 SIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFK 576
SSD S + + + T+ S + +STP + S G S N N+ + +
Sbjct: 588 YEVASNSSDYYSQTVSSITASGTTSSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQ 647
Query: 577 FKHT----LKNDQSAGRGSS-APPSRNLNFTLSQPDAS 675
T + QS SS A S +++T S D+S
Sbjct: 648 TTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSS 685
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
(hPLIC-1)
Length = 589
Score = 33.5 bits (75), Expect = 0.80
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 358 TEDEDPLPNSKNDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRS 537
TE+ DPLPN + Q+S S+ T ST + + ++ + TT N G
Sbjct: 314 TENRDPLPNP-----WAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVG 368
Query: 538 KQNYNTAIDKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQ-PDASKDMCKNSNYFA 708
+NT ++ + +N Q SAP R++ +LSQ PD + M N+ FA
Sbjct: 369 ASMFNTPGMQSL-LQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLNNPLFA 425
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 33.5 bits (75), Expect = 0.80
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 11/188 (5%)
Frame = +1
Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSK-------- 390
D SN NS DS ++ S + D D + S S S + D +S
Sbjct: 723 DSSNSNSSDSDSSNSSDSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNS 782
Query: 391 ---NDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAI 561
NDS SSD +S +NS+ + S+ + + NS+ N + +
Sbjct: 783 SDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSS 842
Query: 562 DKNFKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKDMCKNSNYFASWLPAVNFNSD 741
D + +D S S+ S N + + D+S + + +S + +SD
Sbjct: 843 DSSD------SSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSNESSNSSD 896
Query: 742 LKSGSQST 765
S S+
Sbjct: 897 SSDSSNSS 904
Score = 32.3 bits (72), Expect = 1.8
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Frame = +1
Query: 235 DRSNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQ 414
D S+ +S DS N++ D D + +S S D + D D +S +DS
Sbjct: 548 DSSDSDSSDSSNSS-----DSSDSSDS--DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSN 600
Query: 415 SSDQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNT--------AIDKN 570
SSD S ++S+ + S+ K S+ + +S + N+ + D +
Sbjct: 601 SSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSS 660
Query: 571 FKFKHTLKNDQSAGRGSSAPPSRNLNFTLSQPDASKDMCKNSNYFASWLPAVNFNSDLKS 750
+ +D S SS+ + + S S D +SN S + + +SD
Sbjct: 661 NSSNSSDSSDSSDSSDSSSSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSD 720
Query: 751 GSQSTANQFRNCD 789
S S+ + + D
Sbjct: 721 SSDSSNSNSSDSD 733
>sp|Q49413|HMW1_MYCGE Cytadherence high molecular weight protein 1 (Cytadherence
accessory protein 1)
Length = 1139
Score = 33.5 bits (75), Expect = 0.80
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)
Frame = +1
Query: 244 NENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQSSD 423
+EN+KD+ NN D L+ S S T S D+ E SK++ I ++
Sbjct: 399 SENNKDATNN------DSLNSEFIQLNSNSETASDDVHYE-------SKSEPIHDYKFGS 445
Query: 424 QISSPIKTNS--TKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKN 597
+S NS ++P ++ T F++ + + Y+ I +N + K TL
Sbjct: 446 DLSQSNSNNSLESEPVKFNS----ETAPDAHFESQSEPVDQVQYD--IYQNEELKPTLDQ 499
Query: 598 DQSAGRGSSAPPSRNLNF------TLSQPDASKDMCKNSNYFA----SWLPAVNFNSDL 744
S + P N F + QP++ D + ++FA S + +F+SDL
Sbjct: 500 PSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQPESTTDSYSFDSDL 558
>sp|P32323|AGA1_YEAST A-agglutinin attachment subunit precursor
Length = 725
Score = 32.7 bits (73), Expect = 1.4
Identities = 32/145 (22%), Positives = 57/145 (39%)
Frame = +1
Query: 241 SNENSKDSVNNASMPTFDILDKAHGHRESCSPTLSLDITTEDEDPLPNSKNDSIFYFQSS 420
S S S +++S T S SP+ +T L ++ + S QSS
Sbjct: 197 STSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPS-----STSTSSSLTSTSSSSTSTSQSS 251
Query: 421 DQISSPIKTNSTKPTSISNFKPISTPKPTTFQNSTRGRSKQNYNTAIDKNFKFKHTLKND 600
SS + ST P+S S ++ P++ S S +Y+T+ +
Sbjct: 252 TSTSS--SSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSL-------TS 302
Query: 601 QSAGRGSSAPPSRNLNFTLSQPDAS 675
S S++P S +++ T + +S
Sbjct: 303 SSPTLASTSPSSTSISSTFTDSTSS 327
>sp|Q10187|UCP6_SCHPO UBA-domain containing protein 6
Length = 612
Score = 32.7 bits (73), Expect = 1.4
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +1
Query: 379 PNSKNDSIFYFQSSDQISSPIKTNSTKPTSISNFKPISTP 498
PN++ DS F S TNS KPT I NFKP STP
Sbjct: 240 PNAEFDSTFCSTLSSL------TNSEKPTYIFNFKPNSTP 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.128 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,416,765
Number of Sequences: 369166
Number of extensions: 1637331
Number of successful extensions: 4810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4791
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)