Planaria EST Database


DrC_02040

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02040
         (833 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62921|UB7I3_RAT  Ubiquitin-conjugating enzyme 7-interact...   101   3e-21
sp|Q9WUB0|UB7I3_MOUSE  Ubiquitin-conjugating enzyme 7-intera...    97   5e-20
sp|Q9BYM8|UB7I3_HUMAN  Ubiquitin-conjugating enzyme 7-intera...    94   4e-19
sp|P36113|YKZ7_YEAST  Hypothetical 63.6 kDa protein in YPT52...    42   0.002
sp|Q22431|ARI2_CAEEL  Probable ariadne-2 protein (Ari-2)           42   0.002
sp|O95376|ARI2_HUMAN  Ariadne-2 protein homolog (ARI-2) (Tri...    39   0.014
sp|Q9Y4X5|ARI1_HUMAN  Ariadne-1 protein homolog (ARI-1) (Ubi...    38   0.030
sp|Q9Z1K5|ARI1_MOUSE  Ariadne-1 protein homolog (ARI-1) (Ubi...    38   0.030
sp|Q04638|YMG8_YEAST  Hypothetical 54.1 kDa protein in DAK1-...    37   0.051
sp|Q9Z1K6|ARI2_MOUSE  Ariadne-2 protein homolog (ARI-2) (Tri...    37   0.067
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
           interacting with PKC) (Protein kinase C-binding protein
           beta-15)
          Length = 498

 Score =  101 bits (251), Expect = 3e-21
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 10/211 (4%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAVNPFYPIEC------FQCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           C H  C  C +  I  +    + C      + C   L + E     S E   ++L+    
Sbjct: 288 CLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCPGKLLEREIRALLSPEDYQRFLDLGVS 347

Query: 667 LNEILNEKLLKCFNVDCDGRIENVNVPSSYRCSACNKLNCMHCRTTHLDGETCDQWQINN 488
           + E  +     C   DC G     +  + + C  C ++NC+ C+  H +   C ++Q + 
Sbjct: 348 IAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIH-ERMNCREYQDDL 406

Query: 487 KHXXXXXXXXXXXXXXXXXXXI---AMYCVKCGTLCERDGGCYGVKCPICKTALCFITQK 317
            H                       AMYC +C  + ++  GC  ++C +C T +C++T+ 
Sbjct: 407 AHRARNDVAAQQTTEMLRVMLQQGEAMYCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKG 466

Query: 316 ARWGPQGVGDLSSGCKCSF-GNPCHRSCGSC 227
            RWGP G GD S GC+C   G PCH SC +C
Sbjct: 467 PRWGPGGPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
           (UbcM4-interacting protein 28)
          Length = 498

 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 10/211 (4%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAVNPFYPIEC------FQCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           C H  C  C +  I  +    + C      + C   L + E     S E   ++L+    
Sbjct: 288 CLHTFCRECLQGTIRNSQEAEVACPFIDSTYSCPGKLLEREIRALLSPEDYQRFLDLGVS 347

Query: 667 LNEILNEKLLKCFNVDCDGRIENVNVPSSYRCSACNKLNCMHCRTTHLDGETCDQWQIN- 491
           + E  +     C   DC G     +  + + C  C ++NC+ C+  H +   C ++Q + 
Sbjct: 348 IAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIH-EHMNCREYQDDL 406

Query: 490 --NKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKCPICKTALCFITQK 317
                                    AM+C +C  + ++  GC  ++C +C T +C++T+ 
Sbjct: 407 ALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKG 466

Query: 316 ARWGPQGVGDLSSGCKCSF-GNPCHRSCGSC 227
            RWGP G GD S GC+C   G PCH SC +C
Sbjct: 467 PRWGPGGPGDTSGGCRCRVNGIPCHPSCQNC 497
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
           virus X-associated protein 4) (HBV-associated factor 4)
           (RING finger protein 54)
          Length = 500

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 10/211 (4%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAVNPFYPIEC------FQCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           C H  C  C +  I  +    + C      + CS  L + E     + E   ++L+    
Sbjct: 290 CLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGIS 349

Query: 667 LNEILNEKLLKCFNVDCDGRIENVNVPSSYRCSACNKLNCMHCRTTHLDGETCDQWQIN- 491
           + E  +     C   DC G     +  + + C  C  +NC+ C+  H +   C ++Q + 
Sbjct: 350 IAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIH-EQMNCKEYQEDL 408

Query: 490 --NKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKCPICKTALCFITQK 317
                                    AM C +C  + ++  GC  ++C +C T +C++T+ 
Sbjct: 409 ALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 468

Query: 316 ARWGPQGVGDLSSGCKCSF-GNPCHRSCGSC 227
            RWGP G GD S GC+C   G PCH SC +C
Sbjct: 469 PRWGPGGPGDTSGGCRCRVNGIPCHPSCQNC 499
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
          Length = 551

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 9/187 (4%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIA--VNPFYPIECFQCSQVLTDDECLKYFSSEQATKYLNS--KTYLN 662
           CGH+ C +C++  I   ++    I C  CS  L +++  K      ++K ++S  K+++ 
Sbjct: 195 CGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDKVMGHPSSSKLMDSSIKSFVQ 254

Query: 661 EILNEKLLKCFNVDCDGRIENVNVPSSYRCSACNKLNCMHCRTTHLDGETCDQWQINNKH 482
           +  N     C   DC   +   +  S    +  +    + C + H     C  +++++  
Sbjct: 255 KH-NRNYKWCPFADCKSIVHLRDTSSLPEYTRLHYSPFVKCNSFHRFCFNCG-FEVHSPA 312

Query: 481 XXXXXXXXXXXXXXXXXXXIAMY-----CVKCGTLCERDGGCYGVKCPICKTALCFITQK 317
                                +      C KC    E++GGC  + C  CK   C+I + 
Sbjct: 313 DCKITTAWVKKARKESEILNWVLSHTKECPKCSVNIEKNGGCNHMVCSSCKYEFCWICE- 371

Query: 316 ARWGPQG 296
             W P G
Sbjct: 372 GPWAPHG 378
>sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2)
          Length = 482

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
 Frame = -2

Query: 829 CGHKCCTSCFK----KKIAVNPFYPIECF--QCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           CGH  C  C+K     +++      IEC   +C      +  L    +    K    +  
Sbjct: 145 CGHCFCEHCWKSHVESRLSEGVASRIECMESECEVYAPSEFVLSIIKNSPVIKLKYERFL 204

Query: 667 LNEILNE--KLLKCFNVDCDGRIENVNV-PSSYRCSACNKLNCMHCRTTH---LDGETCD 506
           L +++N    L  C   +C   I +  V P    C  C+   C+ C   +      ET  
Sbjct: 205 LRDMVNSHPHLKFCVGNECPVIIRSTEVKPKRVTCMQCHTSFCVKCGADYHAPTSCETIK 264

Query: 505 QWQINNKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKCPICKTALCFI 326
           QW                             C +C +  E+ GGC  ++C  C+   C++
Sbjct: 265 QWMTK---------CADDSETANYISAHTKDCPQCHSCIEKAGGCNHIQCTRCRHHFCWM 315
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
          Length = 493

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 12/180 (6%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAV----NPFYPIECF--QCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           C H+ C SC+++  +V         + C    C     +D       +E+  +      +
Sbjct: 156 CQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKYRRYLF 215

Query: 667 LNEILNEKLLK-CFNVDCDGRIENVNVPSSYR--CSACNKLNCMHCRTTH---LDGETCD 506
            + + +   L+ C   DC   +  V  P + R  C+ CN++ C  CR  +    D  T  
Sbjct: 216 RDYVESHYQLQLCPGADCP-MVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIR 274

Query: 505 QWQINNKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKCPICKTALCFI 326
           +W                             C KC    E++GGC  ++C  CK   C++
Sbjct: 275 KWLTK---------CADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWM 325
>sp|Q9Y4X5|ARI1_HUMAN Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme
           E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein) (HHARI) (H7-AP2) (MOP-6)
          Length = 557

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 44/190 (23%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAVNPF-----YPIEC-FQCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           CGHK C  C+ + +            I C      +L DD  +    ++   K       
Sbjct: 203 CGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLI 262

Query: 667 LNEILN-EKLLK-CFNVDCDGRIENVNVPSS--YRCSACNKLNCMHCRTTHLDGETCDQW 500
            N  +   +LLK C   DC   +  V  P +   RC  C +  C +C     D   C +W
Sbjct: 263 TNSFVECNRLLKWCPAPDCH-HVVKVQYPDAKPVRCK-CGRQFCFNCGENWHDPVKC-KW 319

Query: 499 QINNKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKC--PICKTALCFI 326
                                        C KC    E+DGGC  + C    CK   C++
Sbjct: 320 L-----KKWIKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWV 374

Query: 325 TQKARWGPQG 296
                W P G
Sbjct: 375 C-LGPWEPHG 383
>sp|Q9Z1K5|ARI1_MOUSE Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme
           E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein 77)
          Length = 555

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 44/190 (23%), Positives = 62/190 (32%), Gaps = 12/190 (6%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAVNPF-----YPIEC-FQCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           CGHK C  C+ + +            I C      +L DD  +    ++   K       
Sbjct: 201 CGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLI 260

Query: 667 LNEILN-EKLLK-CFNVDCDGRIENVNVPSS--YRCSACNKLNCMHCRTTHLDGETCDQW 500
            N  +   +LLK C   DC   +  V  P +   RC  C +  C +C     D   C +W
Sbjct: 261 TNSFVECNRLLKWCPAPDCH-HVVKVQYPDAKPVRCK-CGRQFCFNCGENWHDPVKC-KW 317

Query: 499 QINNKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKC--PICKTALCFI 326
                                        C KC    E+DGGC  + C    CK   C++
Sbjct: 318 L-----KKWIKKCDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWV 372

Query: 325 TQKARWGPQG 296
                W P G
Sbjct: 373 C-LGPWEPHG 381
>sp|Q04638|YMG8_YEAST Hypothetical 54.1 kDa protein in DAK1-ORC1 intergenic region
          Length = 464

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 412 CVKCGTLCERDGGCYGVKCPICKTALCFI 326
           C KC  + ER  GC  +KC +C T  CFI
Sbjct: 402 CPKCKVVVERSEGCNKMKCEVCGTLFCFI 430
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 37.0 bits (84), Expect = 0.067
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 12/180 (6%)
 Frame = -2

Query: 829 CGHKCCTSCFKKKIAV----NPFYPIECF--QCSQVLTDDECLKYFSSEQATKYLNSKTY 668
           C H+ C SC+++  +V         I C    C     +D       +E+         +
Sbjct: 155 CQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYRRYLF 214

Query: 667 LNEILNE-KLLKCFNVDCDGRIENVNVPSSYR--CSACNKLNCMHCRTTH---LDGETCD 506
            + + +  +L  C   DC   +  V  P + R  C+ C+++ C  CR  +    D  T  
Sbjct: 215 RDYVESHFQLQLCPGADCP-MVIRVQEPRARRVQCNRCSEVFCFKCRQMYHAPTDCATIR 273

Query: 505 QWQINNKHXXXXXXXXXXXXXXXXXXXIAMYCVKCGTLCERDGGCYGVKCPICKTALCFI 326
           +W                             C KC    E++GGC  ++C  CK   C++
Sbjct: 274 KWLTK---------CADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWM 324
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,113,314
Number of Sequences: 369166
Number of extensions: 1485539
Number of successful extensions: 4969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4958
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)