Planaria EST Database


DrC_02037

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02037
         (953 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02381|RMAR_YEAST  Mitochondrial ribosomal protein VAR1         50   1e-05
sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         45   4e-04
sp|Q12124|MED2_YEAST  RNA polymerase II mediator complex sub...    44   9e-04
sp|Q35905|RMAR_SACDO  Mitochondrial ribosomal protein VAR1         43   0.001
sp|P13824|ARP2_PLAFA  Clustered-asparagine-rich protein (CARP)     42   0.003
sp|P18160|KYK1_DICDI  Non-receptor tyrosine kinase spore lys...    41   0.006
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            41   0.006
sp|P32770|NRP1_YEAST  Asparagine-rich protein (ARP protein)        40   0.013
sp|P40467|YIN0_YEAST  Putative 108.8 kDa transcriptional reg...    39   0.016
sp|P27625|RPC1_PLAFA  DNA-directed RNA polymerase III larges...    39   0.016
>sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1
          Length = 404

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
 Frame = -1

Query: 872 MKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQ 693
           M + KI   + IN H  +  KL  NI   + N  I+ N N  NN +  +   NKL N + 
Sbjct: 130 MNINKIIMSKTINQH--SLNKL--NIKFYYYNNDINNNNNN-NNNNYYMNMMNKLMNIMN 184

Query: 692 DDLNRNL-------------KQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTL 552
           +++N NL              +P K +   +N         LN  D   N     Y++ L
Sbjct: 185 NNMNNNLCNILSYYYNKKVTIEPIKLSYIYLNSDIFSKYISLNDMDKYNNGILTNYQRML 244

Query: 551 NENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPV 405
           N N++ +  N  N + ++ N+ N +   + NN + +  N+N+N N + +
Sbjct: 245 N-NIMPKL-NDHNISMNYINNINNINNNKYNNMINLLNNNNNNNNNNNI 291

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
 Frame = -1

Query: 941 FLTQKLALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVA-FEKLFFNILRNFMNTSIS 765
           +  +K+ +   K   IY N     K   +N  +K N+  +  ++++  NI+    + +IS
Sbjct: 198 YYNKKVTIEPIKLSYIYLNSDIFSKYISLNDMDKYNNGILTNYQRMLNNIMPKLNDHNIS 257

Query: 764 ENK-NTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNY-GDI 591
            N  N +NN +     +N + N L ++ N N        N  IN          NY G+I
Sbjct: 258 MNYINNINNINN--NKYNNMINLLNNNNNNN-------NNNNINNNNNYNNNNNNYIGNI 308

Query: 590 NINPENLTYKKTLNENLINEY-------DNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
           N    N+T      + L+ +Y             N +       L+    NN   +++N 
Sbjct: 309 NNIYNNMTIDNIPMDILMYKYLVGWSIKFKGRLSNNNGRTSTTNLLNGTFNNKKYLWSNI 368

Query: 431 NDNANTSPVCRYHKKFGNSAIN 366
           N+N   + +   H  + NS IN
Sbjct: 369 NNNYKLNYIPSNHNLYNNSNIN 390

 Score = 33.5 bits (75), Expect = 0.90
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
 Frame = -1

Query: 749 LNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENL 570
           +NN+ Q L + N  +N    + N+N++  +   +  IN         L   ++NIN   +
Sbjct: 80  INNKLQHLNNMNN-WNTQIYNYNKNMEIMNTMNDKLINKLLYKMMT-LKLNNMNIN--KI 135

Query: 569 TYKKTLNENLINE-------YDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
              KT+N++ +N+       Y+N  N N +  N+NN      +N  + I  N+ +N   +
Sbjct: 136 IMSKTINQHSLNKLNIKFYYYNNDINNNNN--NNNNNYYMNMMNKLMNIMNNNMNNNLCN 193

Query: 410 PVCRYHKK 387
            +  Y+ K
Sbjct: 194 ILSYYYNK 201
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
 Frame = -1

Query: 854 NSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFN-KLFNDLQDDLNR 678
           N+   +N+++   +    N + N MN +++ N N  N  H +  + N  + N++  ++N 
Sbjct: 251 NNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNN-NMNHNMNNNMNHNMNNNMNHNMNN 309

Query: 677 NLKQPSKC-TNCEINXXXXXXXEILNYGDIN---INPENLTYKKTLNENLINEYDNSEN- 513
           N+   +   ++   N        ++NY +      NP  + +++T N+N+  E +N  N 
Sbjct: 310 NMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNY 369

Query: 512 ---ENQHHFNDNNKLITTEINNDLEIYTNS--NDNANTSPVCRYHKKFGNSAIN 366
              +N  H N+N    +T+  +    Y N+  N+N N +     +   GN+  N
Sbjct: 370 GYDDNTVHVNNNTP--STDFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKN 421

 Score = 43.9 bits (102), Expect = 7e-04
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
 Frame = -1

Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXX 621
           N+  +  N SI  N + +NN     T F+    +  ++ N+N        N         
Sbjct: 59  NVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDN 118

Query: 620 XXEILNYGDININPENLTYKKTLN--ENLINEYDNSENENQHHFNDNNKLITTEIN-NDL 450
               +   D N    +   K T+N   N ++   N  N N++  +  NK  T  +N N+L
Sbjct: 119 NNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNKNNL 178

Query: 449 EIYTNSNDNAN 417
           +   N+NDN N
Sbjct: 179 KFTQNNNDNMN 189

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
 Frame = -1

Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDLQDD-LNRNLKQPSKCTNCEINXXXXXXXEILN 603
           N +I+E+ N  NN +    + N +F++ Q++ +NRN     K  N   N         + 
Sbjct: 187 NMNINEDNNNNNNNNN---NNNGVFSNYQNNNMNRNNSINIK-RNLNNNNNINNNMNKMG 242

Query: 602 YGDININPENLTY--------KKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLE 447
             D N N  N  Y        K ++N N+ N  +N+ N N +  N+ N  +   +N+++ 
Sbjct: 243 SQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMN--NNMNHNMNNNMNHNMN 300

Query: 446 IYTNSNDNANTSPV 405
              N N N N + +
Sbjct: 301 NNMNHNMNNNMNNI 314

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
 Frame = -1

Query: 854 NSEEKINHHFVAFEKLFFNI-LRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNR 678
           N  E  N+H         NI  +N  + + S  KNT NN+    TD +       ++ N 
Sbjct: 94  NENENKNYHTGGMNN---NIHFKNKYDNNNSSMKNTDNNK----TDTSYNMKGTINNDNN 146

Query: 677 NLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENL-INEYDNSENENQH 501
           N+       N              NY    +N  NL + +  N+N+ INE +N+ N N  
Sbjct: 147 NMDYLRNINNINEYKGSAKNKFYTNY----MNKNNLKFTQNNNDNMNINEDNNNNNNN-- 200

Query: 500 HFNDNNKLITT------EINNDLEIYTNSNDNAN 417
             N+NN + +         NN + I  N N+N N
Sbjct: 201 -NNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNN 233

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
 Frame = -1

Query: 809 LFFNILRNFMNTSISEN-KNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINX 633
           +F N   N MN + S N K  LNN + +  + NK+ +    D N+N        N  +N 
Sbjct: 207 VFSNYQNNNMNRNNSINIKRNLNNNNNINNNMNKMGSQ---DKNQNSNN-----NFYMNY 258

Query: 632 XXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINND 453
                   +N      N  N      +N N+ N  +++ N N +H  +NN      +N++
Sbjct: 259 NYQNRKNSMN------NNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNN------MNHN 306

Query: 452 LEIYTNSNDNANTSPVCRYHKKFGNSAIN 366
           +    N+ ++ ++     YH     S +N
Sbjct: 307 MNNNMNNINSLDSDMSPNYHAHVKMSMMN 335

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -1

Query: 593 ININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEI-----YTNSN 429
           +N N  N    K  N    N  DN+++ N +  N+NN  +   INN+  +     Y N N
Sbjct: 409 VNNNSSNGNNMKNENSENKNVADNNDSLNNNKNNNNNINMNESINNNNTLNNNNEYNNQN 468

Query: 428 DN 423
           +N
Sbjct: 469 NN 470

 Score = 30.0 bits (66), Expect = 10.0
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
 Frame = -1

Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCE-INXXXXXXXE 612
           +F + ++  N N LNN + + +  N   ++  +  N N +  +   N + +N        
Sbjct: 386 DFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKN---- 441

Query: 611 ILNYGDININPENLTYKKTLNENLINEYDN---SENENQHHFNDNNKLITTEINN 456
             N  +IN+N E++    TLN N  NEY+N   +E+E+   + +  +    +IN+
Sbjct: 442 --NNNNINMN-ESINNNNTLNNN--NEYNNQNNNEDEDDDDWGELGEDKYIDINS 491
>sp|Q12124|MED2_YEAST RNA polymerase II mediator complex subunit 2
          Length = 431

 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
 Frame = -1

Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDL-----QDDLNRNLKQPS--KCTNCEINXXXXX 621
           N ++ E K   +N      D    +ND+     ++++N N+      K  N E N     
Sbjct: 252 NATVDETKGFDDN------DSGNNYNDINISSIENNINNNINSTKNGKDNNNESNKNNNG 305

Query: 620 XXEILNYGDININPENLTYKKTLNENLINEY--DNSENENQHHFNDNNKLITTEINNDLE 447
             +  N  + N N  N + K   N N  N    DN  N N +  NDNN     + NN   
Sbjct: 306 DEKNKNNNEDNENNNNSSEKNNNNNNNNNNNNDDNGNNNNNNSGNDNNNTTNNDSNNKNN 365

Query: 446 IYTNSNDNAN 417
             T  NDN N
Sbjct: 366 SITTGNDNEN 375

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 605 NYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSND 426
           NY DINI+    + +  +N N+ +  +  +N N+ + N+N        N D E   NS++
Sbjct: 269 NYNDINIS----SIENNINNNINSTKNGKDNNNESNKNNNGDEKNKNNNEDNENNNNSSE 324

Query: 425 NANTS 411
             N +
Sbjct: 325 KNNNN 329

 Score = 30.0 bits (66), Expect = 10.0
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
 Frame = -1

Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
           N+ + +IS  +N +NN   + +  N   N+ + + N N  + +K  N E N       E 
Sbjct: 269 NYNDINISSIENNINNN--INSTKNGKDNNNESNKNNNGDEKNKNNN-EDNENNNNSSEK 325

Query: 608 LNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNK--LITTE------INND 453
            N  + N N  N       N N  N    ++N N  + + NNK   ITT       +NND
Sbjct: 326 NNNNNNNNNNNNDD-----NGNNNNNNSGNDNNNTTNNDSNNKNNSITTGNDNENIVNND 380

Query: 452 LEIYTNSNDNANTSP 408
           L     SN   N  P
Sbjct: 381 LPTTVVSNPGDNPPP 395
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
          Length = 373

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
 Frame = -1

Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDF-----NKLFNDLQDDL-NRNLKQPSKCTNCEI 639
           N++ + MN + + N N +NN+  LL +      NK  N+++  L N N+   +K  +  +
Sbjct: 7   NMILSMMNKTNNNNNNNINNKKLLLKNMLLDMNNKRMNNMKTMLKNNNMNINNKLQH--L 64

Query: 638 NXXXXXXXEILNYGDININPENLTYKKTLNENL------------INEYDNSENENQHHF 495
           N       +I NY   N+   N+   K +N+ L            IN+   S+  NQH  
Sbjct: 65  NNMNNWNTQIYNYNK-NMEIMNIMNDKLINKLLYKMMTLKLNNMNINKIIMSKTINQHSL 123

Query: 494 NDNNKLITTEINNDLEIYTNSNDN 423
           N  N       NND+    N+N+N
Sbjct: 124 NKLNIKFYYYYNNDINNMNNNNNN 147

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 2/194 (1%)
 Frame = -1

Query: 941 FLTQKLALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVA-FEKLFFNILRNFMNTSIS 765
           +  +K+ + + K   IY N     K   +N   K N+  +  ++++  NI+    + +IS
Sbjct: 175 YYNKKVTIESIKLSYIYLNSDIFSKYISLNDMNKYNNGILTNYQRMLNNIMPKLNDHNIS 234

Query: 764 ENK-NTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDIN 588
            N  N +NN +      N  +N++ + LN N    +   N   N          N    N
Sbjct: 235 MNYINNINNIN------NNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIYNNMTIDN 288

Query: 587 INPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSP 408
           I  + L YK  +  ++  ++    N N    +  N L+    NN   +++N N+N   + 
Sbjct: 289 IPMDILMYKYLVGWSI--KFKGRLNNNNGRTSTTN-LLNGTFNNKKYLWSNINNNYKLNY 345

Query: 407 VCRYHKKFGNSAIN 366
           +   H  + NS IN
Sbjct: 346 IPSNHNLYNNSNIN 359

 Score = 38.5 bits (88), Expect = 0.028
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 9/237 (3%)
 Frame = -1

Query: 908 KFLKIYENFIKLMKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQL 729
           KF   Y N I        N     N++++       NI+ N MN S+    +   N+   
Sbjct: 129 KFYYYYNNDIN-------NMNNNNNNYYMNMMNKLMNIMNNNMNNSLCNILSYYYNKKVT 181

Query: 728 LTDFNKLFNDLQDDLNR---NLKQPSKCTNCEINXXXXXXXEIL-NYGDININPENLTYK 561
           +      +  L  D+     +L   +K  N  +         I+    D NI+   +   
Sbjct: 182 IESIKLSYIYLNSDIFSKYISLNDMNKYNNGILTNYQRMLNNIMPKLNDHNISMNYINNI 241

Query: 560 KTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFG 381
             +N N  N   N  N N ++ N+NN      I+N   IY N   +     +  Y    G
Sbjct: 242 NNINNNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIYNNMTIDNIPMDILMYKYLVG 301

Query: 380 NSAINCKAPCKFKTFCRNHRKFGASAIKCITPCNFNNR-----FVELSYKNPQLPGN 225
            S        KFK    N+   G ++   +    FNN+      +  +YK   +P N
Sbjct: 302 WS-------IKFKGRLNNNN--GRTSTTNLLNGTFNNKKYLWSNINNNYKLNYIPSN 349
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
          Length = 443

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 37/145 (25%), Positives = 64/145 (44%)
 Frame = -1

Query: 854 NSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRN 675
           NS    N++    +  F N  RN  N +++ N N  N+ + ++ + N   N+ Q + N  
Sbjct: 164 NSSNNNNNNQTNTQNNFMN--RNMKNKNMNNNNNNNNSNNNMMMNMN-FNNNQQMNNNPM 220

Query: 674 LKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHF 495
           L Q +   N   N           Y D  ++P +L      N N  N   N+ N N ++ 
Sbjct: 221 LNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHL------NNN--NNNINNNNNNNNNN 272

Query: 494 NDNNKLITTEINNDLEIYTNSNDNA 420
           N+NN ++  + N+ L     +NDN+
Sbjct: 273 NNNNNVMFRQNNSHLAQMYQANDNS 297

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
 Frame = -1

Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
           N MN     N N+ NN +      N   N   + +NRN+K  +   N   N         
Sbjct: 153 NNMNNYNFYNNNSSNNNN------NNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMN 206

Query: 608 LNYGD---ININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYT 438
           +N+ +   +N NP        LN N  N Y+N+       + D         NN+  I  
Sbjct: 207 MNFNNNQQMNNNPMLNQNNFMLNNN--NNYNNNAKNVNDMYRDGEMSPNHLNNNNNNINN 264

Query: 437 NSNDNANTS 411
           N+N+N N +
Sbjct: 265 NNNNNNNNN 273

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
 Frame = -1

Query: 887 NFIKLMK-LPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRH--QLLTDF 717
           N +K +K L   + EE+      A   +  N   N  N++    KN +NN +  Q  T++
Sbjct: 81  NVLKNIKNLIDTSGEERNIDAKFAVPNVSINNNNNNNNSNTFFQKNNMNNTNFSQGSTNY 140

Query: 716 NKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLI 537
              +N      N N+   +   N              N  + N N +  T    +N N+ 
Sbjct: 141 GSNYNSENFQGNNNMNNYNFYNN--------------NSSNNNNNNQTNTQNNFMNRNMK 186

Query: 536 NEYDNSENENQH---------HFNDNNKLITTEINNDLEIYTNSNDNANTS 411
           N+  N+ N N +         +FN+N ++    + N      N+N+N N +
Sbjct: 187 NKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYNNN 237
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
           1)
          Length = 1584

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
 Frame = -1

Query: 779 NTSISENKNTLNNRHQLLTD----FNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXE 612
           N + + N N  NN + ++ +         +     +N N    S   N   N        
Sbjct: 405 NNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNN 464

Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
             N  + N N  N +     N N IN   N+ N N ++ N+NN   +   +N+  I  N+
Sbjct: 465 NNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNN 524

Query: 431 NDNANTSPV 405
           N+N N + +
Sbjct: 525 NNNNNNNNI 533

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
 Frame = -1

Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNY 600
           N  IS N N  NN +    + N   N+  ++ N N    S   N  IN            
Sbjct: 443 NEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTT--------- 493

Query: 599 GDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTE--INNDLEIYTNSND 426
            + N N  N       N N  +  +N  N N ++ N+NN  +T +  I +  E  T S  
Sbjct: 494 NNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNNNNIYLTKKPSIGSTDESSTGSLG 553

Query: 425 NANTS 411
             N+S
Sbjct: 554 GNNSS 558

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
 Frame = -1

Query: 797 ILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXX 618
           +L+N  +TSI       NN            N+  ++ N N+    K T           
Sbjct: 390 MLKNVNSTSILVPNGNNNNNS----------NNNNNNNNNNIIGNGKITTTTTTSTSPSS 439

Query: 617 XEILNYGDININPENLTYKKTLNENLINEYDNSENENQH------HFNDNNKLITTEINN 456
             I N  DI+ N  N       N N  N  +N+ N N +      + N+NN   TT  NN
Sbjct: 440 --INNNEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNN 497

Query: 455 DLEIYTNSNDNANTS 411
                 N+N+N+N++
Sbjct: 498 SNSNNNNNNNNSNSN 512

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -1

Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
           I+  G I       T   ++N N     +N+ N N ++ N+NN       NN+     N+
Sbjct: 421 IIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNN-------NNNNNNNNNN 473

Query: 431 NDNANTSPVCRYHKKFGNSAIN 366
           N+N N++     +    N+  N
Sbjct: 474 NNNNNSNSSNTNNNNINNTTNN 495
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 31/127 (24%), Positives = 51/127 (40%)
 Frame = -1

Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
           N +N + + N N  NN      + N   N+  ++ N N    +   N  IN         
Sbjct: 283 NNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINN-------- 334

Query: 608 LNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSN 429
            N  + N N  N   + T N N+ N  +N+ N N ++  +NN       NN+    +N+ 
Sbjct: 335 -NNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNN-------NNNTSNNSNTT 386

Query: 428 DNANTSP 408
               T+P
Sbjct: 387 TATTTAP 393

 Score = 38.1 bits (87), Expect = 0.037
 Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 3/177 (1%)
 Frame = -1

Query: 686 LNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENEN 507
           LN N    +   N  IN        I N  + N N  N +     N N  N  +N+ N N
Sbjct: 267 LNSNNNNNNNNNNSNINN-------INNNNNNNSNNNNNSSNNNNNNN--NSTNNNTNNN 317

Query: 506 QHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFGNSAINCKAP--CKFKTFC 333
            ++ N+N       INN+     N+N+NAN       +   GN++ N   P     +   
Sbjct: 318 NNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNT--NNNNMGNNSNNNNNPNNNNHQNNN 375

Query: 332 RNHRKFGASAIKCITPCNFNNRFVELSYKNPQLPGNL-QIKLLPNTTPLTPEALKNY 165
            N+    ++     T     N     S  N    GNL ++  L ++ P  P A K++
Sbjct: 376 NNNTSNNSNTTTATTTAPGGNNLTN-SLNNAGNLGNLGRVSGLHSSDPNNPNAQKSF 431

 Score = 38.1 bits (87), Expect = 0.037
 Identities = 29/119 (24%), Positives = 46/119 (38%)
 Frame = -1

Query: 767 SENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDIN 588
           S N N  NN +  + + N   N+  ++ N +    +   N   N          N  + N
Sbjct: 269 SNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNN----------NTNNNN 318

Query: 587 INPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
            N  N T     N N  N   N+ N N ++ N NN  +    NN+     N++ N N +
Sbjct: 319 NNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNNNN 377

 Score = 37.0 bits (84), Expect = 0.082
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -1

Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
           ILN  + N N  N +    +N N  N  +N+ N + ++ N+NN       NN+     N+
Sbjct: 266 ILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNT 325

Query: 431 NDNAN 417
           N+N N
Sbjct: 326 NNNNN 330

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -1

Query: 608 LNYGDININPENLTYKKTLNENLINEYDN---SENENQHHFNDNNKLITTEINNDLEIYT 438
           L  G +N N  N       N N IN  +N   + N N  + N+NN   T    N+    T
Sbjct: 262 LGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNT 321

Query: 437 NSNDNANTSPVCRYHKKFGNSAIN 366
           N+N N N + +   +    N+  N
Sbjct: 322 NNNTNNNNNNINNNNNNTNNNNNN 345

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 27/102 (26%), Positives = 37/102 (36%)
 Frame = -1

Query: 716 NKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLI 537
           N L N + +  N N    +      IN          N    N N  N +     N N  
Sbjct: 260 NTLGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNN 319

Query: 536 NEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
           N  +N+ N N +  N+NN       NN     TN+N+  N S
Sbjct: 320 NTNNNTNNNNNNI-NNNNNNTNNNNNNANNQNTNNNNMGNNS 360

 Score = 30.0 bits (66), Expect = 10.0
 Identities = 27/115 (23%), Positives = 41/115 (35%)
 Frame = -1

Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXX 621
           N   N  N + S N NT NN +    + N   N++ ++ N      +   N   N     
Sbjct: 298 NSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMG 357

Query: 620 XXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINN 456
                N  + N NP N  ++   N N  N  +NS              +T  +NN
Sbjct: 358 -----NNSNNNNNPNNNNHQ---NNNNNNTSNNSNTTTATTTAPGGNNLTNSLNN 404
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
          Length = 719

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
 Frame = -1

Query: 605 NYGDININPENLTYKKTLNENLIN-----EYDNSENENQHHFNDNNKLITTEINNDLEIY 441
           N  + N N  N+T  +    N IN       +NS N N H+ N NN      IN++    
Sbjct: 492 NINNNNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHNNNHHNGSINSNSN-- 549

Query: 440 TNSNDNANTSPVCRYHKKFGNSAINCKAPCKFKTFCRNHRKFGASAIKCITPCNFNN 270
           TN+N+N N           GN++ NC +       C ++  F A   KC T C ++N
Sbjct: 550 TNNNNNNNN----------GNNSNNCNSNIGMGG-CGSNMPFRAGDWKCST-CTYHN 594
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
            intergenic region
          Length = 964

 Score = 39.3 bits (90), Expect = 0.016
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 605  NYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSND 426
            N   IN N  N++ K   N N+ N  +N+ N N +  N+NN       NN+     +SN+
Sbjct: 817  NPDTINNNYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNN 876

Query: 425  NANTS 411
            N N +
Sbjct: 877  NNNNN 881

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -1

Query: 605  NYGDI---NINPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTN 435
            NY ++   N N  N+T     N N  N  +N+ N N ++ N+NN       NN+     N
Sbjct: 824  NYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNNNNNNNNN 883

Query: 434  SNDN 423
             N+N
Sbjct: 884  KNNN 887

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 8/137 (5%)
 Frame = -1

Query: 803  FNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXX 624
            F+   +  N S + N +T+NN +  ++  N   N++ ++ N N                 
Sbjct: 803  FDFSSSKSNASNNSNPDTINNNYNNVSGKNNNNNNITNNSNNNHNN-------------- 848

Query: 623  XXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEI 444
                  N  D N N  N       N N  N  ++S N N ++ N NN     +I+N+   
Sbjct: 849  ------NNNDNNNNNNN---NNNNNNNNNNSGNSSNNNNNNNNNKNNNDFGIKIDNNSPS 899

Query: 443  YTN--------SNDNAN 417
            Y          S DN N
Sbjct: 900  YEGFPQLQIPLSQDNLN 916
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
          Length = 2339

 Score = 39.3 bits (90), Expect = 0.016
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
 Frame = -1

Query: 836  NHHFVAFEKLFFNILRNFMNTSISENKNTL----NNRHQLLT-DFNKLFNDLQDDLNRNL 672
            N +   F+K+F +I+    +  +   KN +    + +HQ  T + N ++N++ +++N N 
Sbjct: 1027 NTYLDQFDKVFDHIVSISSSHLLLSYKNKIPYLPHVQHQNKTSNMNNIYNNM-NNINNND 1085

Query: 671  KQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFN 492
               S   N + N             +IN N  N+      N N+ N ++N  N +  H N
Sbjct: 1086 SNRSIIYNNDSNM-----------NNINNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNN 1134

Query: 491  DNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFGNSAI 369
            D+N  + +  NND  + +  N+N+N + +   H    N +I
Sbjct: 1135 DSN--MNSIHNNDSNMNSIHNNNSNMNNI---HNNDSNRSI 1170

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
 Frame = -1

Query: 926  LALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNT- 750
            +++ ++  L  Y+N  K+  LP +  + K ++    +  +  NI  N  N SI  N ++ 
Sbjct: 1041 VSISSSHLLLSYKN--KIPYLPHVQHQNKTSNMNNIYNNMN-NINNNDSNRSIIYNNDSN 1097

Query: 749  LNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENL 570
            +NN +   ++ N + N+   ++N      S  +    N          N   I+ N  N+
Sbjct: 1098 MNNINNNDSNMNSIHNN-NSNMNNIHNNDSNRSIIHNNDS--------NMNSIHNNDSNM 1148

Query: 569  TYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVC 402
                  N N+ N ++N  N +  H ND+N  + +  NND     N  D  +   +C
Sbjct: 1149 NSIHNNNSNMNNIHNNDSNRSIIHNNDSN--MNSIHNNDSNNNNNYKDCTHNPYIC 1202

 Score = 33.5 bits (75), Expect = 0.90
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 803 FNILRNFMNTS---ISENKNTLNNRHQL--LTDFNKLFNDLQDDLNRNLKQPSKCTNCEI 639
           FN++ N++N +   +  N   +NN   L  + D N + ND+ +++N   K  S+   C +
Sbjct: 453 FNVVNNYINNNCKNVRYNIKDVNNNVLLKDMCDINNMNNDINNNINNIYKNTSETNLCNV 512

Query: 638 N 636
           N
Sbjct: 513 N 513

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
 Frame = -1

Query: 869  KLPKINSEEKINHHFVA----FEKLFFNIL----RNFMNTSISENKNTLNNRHQLLTDFN 714
            K+ KI ++EK  +H       F++  + ++     N  N + ++N N  NN +   ++ N
Sbjct: 1495 KIIKIKNKEKRKYHPKEEKENFDRNNYKMITDNNNNDNNNNNNDNNNNDNNNNNNNSNNN 1554

Query: 713  KLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLIN 534
              + +L DD+N NL   +  TN   N       +  N  ++  N  N+  K   N +  +
Sbjct: 1555 NYYYNLHDDVN-NLGVTNYNTNIYPNDCNGIYEKETNNNELTTN-SNMCDK---NNDFSD 1609

Query: 533  EYDNSENEN 507
            E+ N+ NEN
Sbjct: 1610 EFFNNINEN 1618

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 560  KTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYH 393
            K + +N  N  DN+ N N ++ NDNN       NN+   Y N +D+ N   V  Y+
Sbjct: 1522 KMITDN--NNNDNNNNNNDNNNNDNNNNNNNSNNNN--YYYNLHDDVNNLGVTNYN 1573

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
 Frame = -1

Query: 590  NINPENLTYKKTLNENLINEYDNSENENQHHFN---DNNKLITTEINNDL---------E 447
            N N +N       N N  N  +N+ N N +++N   D N L  T  N ++         E
Sbjct: 1527 NNNNDNNNNNNDNNNNDNNNNNNNSNNNNYYYNLHDDVNNLGVTNYNTNIYPNDCNGIYE 1586

Query: 446  IYTNSNDNANTSPVCRYHKKFGNSAIN 366
              TN+N+    S +C  +  F +   N
Sbjct: 1587 KETNNNELTTNSNMCDKNNDFSDEFFN 1613
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,429,991
Number of Sequences: 369166
Number of extensions: 2007240
Number of successful extensions: 8188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7072
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)