Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O08
(953 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1 50 1e-05
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 45 4e-04
sp|Q12124|MED2_YEAST RNA polymerase II mediator complex sub... 44 9e-04
sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 43 0.001
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 42 0.003
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 41 0.006
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 41 0.006
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 40 0.013
sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional reg... 39 0.016
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 39 0.016
>sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1
Length = 404
Score = 49.7 bits (117), Expect = 1e-05
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Frame = -1
Query: 872 MKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQ 693
M + KI + IN H + KL NI + N I+ N N NN + + NKL N +
Sbjct: 130 MNINKIIMSKTINQH--SLNKL--NIKFYYYNNDINNNNNN-NNNNYYMNMMNKLMNIMN 184
Query: 692 DDLNRNL-------------KQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTL 552
+++N NL +P K + +N LN D N Y++ L
Sbjct: 185 NNMNNNLCNILSYYYNKKVTIEPIKLSYIYLNSDIFSKYISLNDMDKYNNGILTNYQRML 244
Query: 551 NENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPV 405
N N++ + N N + ++ N+ N + + NN + + N+N+N N + +
Sbjct: 245 N-NIMPKL-NDHNISMNYINNINNINNNKYNNMINLLNNNNNNNNNNNI 291
Score = 41.2 bits (95), Expect = 0.004
Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
Frame = -1
Query: 941 FLTQKLALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVA-FEKLFFNILRNFMNTSIS 765
+ +K+ + K IY N K +N +K N+ + ++++ NI+ + +IS
Sbjct: 198 YYNKKVTIEPIKLSYIYLNSDIFSKYISLNDMDKYNNGILTNYQRMLNNIMPKLNDHNIS 257
Query: 764 ENK-NTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNY-GDI 591
N N +NN + +N + N L ++ N N N IN NY G+I
Sbjct: 258 MNYINNINNINN--NKYNNMINLLNNNNNNN-------NNNNINNNNNYNNNNNNYIGNI 308
Query: 590 NINPENLTYKKTLNENLINEY-------DNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
N N+T + L+ +Y N + L+ NN +++N
Sbjct: 309 NNIYNNMTIDNIPMDILMYKYLVGWSIKFKGRLSNNNGRTSTTNLLNGTFNNKKYLWSNI 368
Query: 431 NDNANTSPVCRYHKKFGNSAIN 366
N+N + + H + NS IN
Sbjct: 369 NNNYKLNYIPSNHNLYNNSNIN 390
Score = 33.5 bits (75), Expect = 0.90
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Frame = -1
Query: 749 LNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENL 570
+NN+ Q L + N +N + N+N++ + + IN L ++NIN +
Sbjct: 80 INNKLQHLNNMNN-WNTQIYNYNKNMEIMNTMNDKLINKLLYKMMT-LKLNNMNIN--KI 135
Query: 569 TYKKTLNENLINE-------YDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
KT+N++ +N+ Y+N N N + N+NN +N + I N+ +N +
Sbjct: 136 IMSKTINQHSLNKLNIKFYYYNNDINNNNN--NNNNNYYMNMMNKLMNIMNNNMNNNLCN 193
Query: 410 PVCRYHKK 387
+ Y+ K
Sbjct: 194 ILSYYYNK 201
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 44.7 bits (104), Expect = 4e-04
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Frame = -1
Query: 854 NSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFN-KLFNDLQDDLNR 678
N+ +N+++ + N + N MN +++ N N N H + + N + N++ ++N
Sbjct: 251 NNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNN-NMNHNMNNNMNHNMNNNMNHNMNN 309
Query: 677 NLKQPSKC-TNCEINXXXXXXXEILNYGDIN---INPENLTYKKTLNENLINEYDNSEN- 513
N+ + ++ N ++NY + NP + +++T N+N+ E +N N
Sbjct: 310 NMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNY 369
Query: 512 ---ENQHHFNDNNKLITTEINNDLEIYTNS--NDNANTSPVCRYHKKFGNSAIN 366
+N H N+N +T+ + Y N+ N+N N + + GN+ N
Sbjct: 370 GYDDNTVHVNNNTP--STDFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKN 421
Score = 43.9 bits (102), Expect = 7e-04
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Frame = -1
Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXX 621
N+ + N SI N + +NN T F+ + ++ N+N N
Sbjct: 59 NVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDN 118
Query: 620 XXEILNYGDININPENLTYKKTLN--ENLINEYDNSENENQHHFNDNNKLITTEIN-NDL 450
+ D N + K T+N N ++ N N N++ + NK T +N N+L
Sbjct: 119 NNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNKNNL 178
Query: 449 EIYTNSNDNAN 417
+ N+NDN N
Sbjct: 179 KFTQNNNDNMN 189
Score = 36.2 bits (82), Expect = 0.14
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Frame = -1
Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDLQDD-LNRNLKQPSKCTNCEINXXXXXXXEILN 603
N +I+E+ N NN + + N +F++ Q++ +NRN K N N +
Sbjct: 187 NMNINEDNNNNNNNNN---NNNGVFSNYQNNNMNRNNSINIK-RNLNNNNNINNNMNKMG 242
Query: 602 YGDININPENLTY--------KKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLE 447
D N N N Y K ++N N+ N +N+ N N + N+ N + +N+++
Sbjct: 243 SQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMN--NNMNHNMNNNMNHNMN 300
Query: 446 IYTNSNDNANTSPV 405
N N N N + +
Sbjct: 301 NNMNHNMNNNMNNI 314
Score = 35.8 bits (81), Expect = 0.18
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Frame = -1
Query: 854 NSEEKINHHFVAFEKLFFNI-LRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNR 678
N E N+H NI +N + + S KNT NN+ TD + ++ N
Sbjct: 94 NENENKNYHTGGMNN---NIHFKNKYDNNNSSMKNTDNNK----TDTSYNMKGTINNDNN 146
Query: 677 NLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENL-INEYDNSENENQH 501
N+ N NY +N NL + + N+N+ INE +N+ N N
Sbjct: 147 NMDYLRNINNINEYKGSAKNKFYTNY----MNKNNLKFTQNNNDNMNINEDNNNNNNN-- 200
Query: 500 HFNDNNKLITT------EINNDLEIYTNSNDNAN 417
N+NN + + NN + I N N+N N
Sbjct: 201 -NNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNN 233
Score = 35.4 bits (80), Expect = 0.24
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Frame = -1
Query: 809 LFFNILRNFMNTSISEN-KNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINX 633
+F N N MN + S N K LNN + + + NK+ + D N+N N +N
Sbjct: 207 VFSNYQNNNMNRNNSINIKRNLNNNNNINNNMNKMGSQ---DKNQNSNN-----NFYMNY 258
Query: 632 XXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINND 453
+N N N +N N+ N +++ N N +H +NN +N++
Sbjct: 259 NYQNRKNSMN------NNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNN------MNHN 306
Query: 452 LEIYTNSNDNANTSPVCRYHKKFGNSAIN 366
+ N+ ++ ++ YH S +N
Sbjct: 307 MNNNMNNINSLDSDMSPNYHAHVKMSMMN 335
Score = 30.8 bits (68), Expect = 5.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -1
Query: 593 ININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEI-----YTNSN 429
+N N N K N N DN+++ N + N+NN + INN+ + Y N N
Sbjct: 409 VNNNSSNGNNMKNENSENKNVADNNDSLNNNKNNNNNINMNESINNNNTLNNNNEYNNQN 468
Query: 428 DN 423
+N
Sbjct: 469 NN 470
Score = 30.0 bits (66), Expect = 10.0
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -1
Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCE-INXXXXXXXE 612
+F + ++ N N LNN + + + N ++ + N N + + N + +N
Sbjct: 386 DFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKN---- 441
Query: 611 ILNYGDININPENLTYKKTLNENLINEYDN---SENENQHHFNDNNKLITTEINN 456
N +IN+N E++ TLN N NEY+N +E+E+ + + + +IN+
Sbjct: 442 --NNNNINMN-ESINNNNTLNNN--NEYNNQNNNEDEDDDDWGELGEDKYIDINS 491
>sp|Q12124|MED2_YEAST RNA polymerase II mediator complex subunit 2
Length = 431
Score = 43.5 bits (101), Expect = 9e-04
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Frame = -1
Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDL-----QDDLNRNLKQPS--KCTNCEINXXXXX 621
N ++ E K +N D +ND+ ++++N N+ K N E N
Sbjct: 252 NATVDETKGFDDN------DSGNNYNDINISSIENNINNNINSTKNGKDNNNESNKNNNG 305
Query: 620 XXEILNYGDININPENLTYKKTLNENLINEY--DNSENENQHHFNDNNKLITTEINNDLE 447
+ N + N N N + K N N N DN N N + NDNN + NN
Sbjct: 306 DEKNKNNNEDNENNNNSSEKNNNNNNNNNNNNDDNGNNNNNNSGNDNNNTTNNDSNNKNN 365
Query: 446 IYTNSNDNAN 417
T NDN N
Sbjct: 366 SITTGNDNEN 375
Score = 33.1 bits (74), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -1
Query: 605 NYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSND 426
NY DINI+ + + +N N+ + + +N N+ + N+N N D E NS++
Sbjct: 269 NYNDINIS----SIENNINNNINSTKNGKDNNNESNKNNNGDEKNKNNNEDNENNNNSSE 324
Query: 425 NANTS 411
N +
Sbjct: 325 KNNNN 329
Score = 30.0 bits (66), Expect = 10.0
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Frame = -1
Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
N+ + +IS +N +NN + + N N+ + + N N + +K N E N E
Sbjct: 269 NYNDINISSIENNINNN--INSTKNGKDNNNESNKNNNGDEKNKNNN-EDNENNNNSSEK 325
Query: 608 LNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNK--LITTE------INND 453
N + N N N N N N ++N N + + NNK ITT +NND
Sbjct: 326 NNNNNNNNNNNNDD-----NGNNNNNNSGNDNNNTTNNDSNNKNNSITTGNDNENIVNND 380
Query: 452 LEIYTNSNDNANTSP 408
L SN N P
Sbjct: 381 LPTTVVSNPGDNPPP 395
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
Length = 373
Score = 42.7 bits (99), Expect = 0.001
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Frame = -1
Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDF-----NKLFNDLQDDL-NRNLKQPSKCTNCEI 639
N++ + MN + + N N +NN+ LL + NK N+++ L N N+ +K + +
Sbjct: 7 NMILSMMNKTNNNNNNNINNKKLLLKNMLLDMNNKRMNNMKTMLKNNNMNINNKLQH--L 64
Query: 638 NXXXXXXXEILNYGDININPENLTYKKTLNENL------------INEYDNSENENQHHF 495
N +I NY N+ N+ K +N+ L IN+ S+ NQH
Sbjct: 65 NNMNNWNTQIYNYNK-NMEIMNIMNDKLINKLLYKMMTLKLNNMNINKIIMSKTINQHSL 123
Query: 494 NDNNKLITTEINNDLEIYTNSNDN 423
N N NND+ N+N+N
Sbjct: 124 NKLNIKFYYYYNNDINNMNNNNNN 147
Score = 42.0 bits (97), Expect = 0.003
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 2/194 (1%)
Frame = -1
Query: 941 FLTQKLALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVA-FEKLFFNILRNFMNTSIS 765
+ +K+ + + K IY N K +N K N+ + ++++ NI+ + +IS
Sbjct: 175 YYNKKVTIESIKLSYIYLNSDIFSKYISLNDMNKYNNGILTNYQRMLNNIMPKLNDHNIS 234
Query: 764 ENK-NTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDIN 588
N N +NN + N +N++ + LN N + N N N N
Sbjct: 235 MNYINNINNIN------NNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIYNNMTIDN 288
Query: 587 INPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSP 408
I + L YK + ++ ++ N N + N L+ NN +++N N+N +
Sbjct: 289 IPMDILMYKYLVGWSI--KFKGRLNNNNGRTSTTN-LLNGTFNNKKYLWSNINNNYKLNY 345
Query: 407 VCRYHKKFGNSAIN 366
+ H + NS IN
Sbjct: 346 IPSNHNLYNNSNIN 359
Score = 38.5 bits (88), Expect = 0.028
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 9/237 (3%)
Frame = -1
Query: 908 KFLKIYENFIKLMKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQL 729
KF Y N I N N++++ NI+ N MN S+ + N+
Sbjct: 129 KFYYYYNNDIN-------NMNNNNNNYYMNMMNKLMNIMNNNMNNSLCNILSYYYNKKVT 181
Query: 728 LTDFNKLFNDLQDDLNR---NLKQPSKCTNCEINXXXXXXXEIL-NYGDININPENLTYK 561
+ + L D+ +L +K N + I+ D NI+ +
Sbjct: 182 IESIKLSYIYLNSDIFSKYISLNDMNKYNNGILTNYQRMLNNIMPKLNDHNISMNYINNI 241
Query: 560 KTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFG 381
+N N N N N N ++ N+NN I+N IY N + + Y G
Sbjct: 242 NNINNNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIYNNMTIDNIPMDILMYKYLVG 301
Query: 380 NSAINCKAPCKFKTFCRNHRKFGASAIKCITPCNFNNR-----FVELSYKNPQLPGN 225
S KFK N+ G ++ + FNN+ + +YK +P N
Sbjct: 302 WS-------IKFKGRLNNNN--GRTSTTNLLNGTFNNKKYLWSNINNNYKLNYIPSN 349
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 42.0 bits (97), Expect = 0.003
Identities = 37/145 (25%), Positives = 64/145 (44%)
Frame = -1
Query: 854 NSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRN 675
NS N++ + F N RN N +++ N N N+ + ++ + N N+ Q + N
Sbjct: 164 NSSNNNNNNQTNTQNNFMN--RNMKNKNMNNNNNNNNSNNNMMMNMN-FNNNQQMNNNPM 220
Query: 674 LKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHF 495
L Q + N N Y D ++P +L N N N N+ N N ++
Sbjct: 221 LNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHL------NNN--NNNINNNNNNNNNN 272
Query: 494 NDNNKLITTEINNDLEIYTNSNDNA 420
N+NN ++ + N+ L +NDN+
Sbjct: 273 NNNNNVMFRQNNSHLAQMYQANDNS 297
Score = 35.8 bits (81), Expect = 0.18
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Frame = -1
Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
N MN N N+ NN + N N + +NRN+K + N N
Sbjct: 153 NNMNNYNFYNNNSSNNNN------NNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMN 206
Query: 608 LNYGD---ININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYT 438
+N+ + +N NP LN N N Y+N+ + D NN+ I
Sbjct: 207 MNFNNNQQMNNNPMLNQNNFMLNNN--NNYNNNAKNVNDMYRDGEMSPNHLNNNNNNINN 264
Query: 437 NSNDNANTS 411
N+N+N N +
Sbjct: 265 NNNNNNNNN 273
Score = 34.7 bits (78), Expect = 0.41
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Frame = -1
Query: 887 NFIKLMK-LPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNTLNNRH--QLLTDF 717
N +K +K L + EE+ A + N N N++ KN +NN + Q T++
Sbjct: 81 NVLKNIKNLIDTSGEERNIDAKFAVPNVSINNNNNNNNSNTFFQKNNMNNTNFSQGSTNY 140
Query: 716 NKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLI 537
+N N N+ + N N + N N + T +N N+
Sbjct: 141 GSNYNSENFQGNNNMNNYNFYNN--------------NSSNNNNNNQTNTQNNFMNRNMK 186
Query: 536 NEYDNSENENQH---------HFNDNNKLITTEINNDLEIYTNSNDNANTS 411
N+ N+ N N + +FN+N ++ + N N+N+N N +
Sbjct: 187 NKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYNNN 237
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 40.8 bits (94), Expect = 0.006
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -1
Query: 779 NTSISENKNTLNNRHQLLTD----FNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXE 612
N + + N N NN + ++ + + +N N S N N
Sbjct: 405 NNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNN 464
Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
N + N N N + N N IN N+ N N ++ N+NN + +N+ I N+
Sbjct: 465 NNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNN 524
Query: 431 NDNANTSPV 405
N+N N + +
Sbjct: 525 NNNNNNNNI 533
Score = 36.6 bits (83), Expect = 0.11
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Frame = -1
Query: 779 NTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNY 600
N IS N N NN + + N N+ ++ N N S N IN
Sbjct: 443 NEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTT--------- 493
Query: 599 GDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTE--INNDLEIYTNSND 426
+ N N N N N + +N N N ++ N+NN +T + I + E T S
Sbjct: 494 NNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNNNNIYLTKKPSIGSTDESSTGSLG 553
Query: 425 NANTS 411
N+S
Sbjct: 554 GNNSS 558
Score = 35.0 bits (79), Expect = 0.31
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Frame = -1
Query: 797 ILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXX 618
+L+N +TSI NN N+ ++ N N+ K T
Sbjct: 390 MLKNVNSTSILVPNGNNNNNS----------NNNNNNNNNNIIGNGKITTTTTTSTSPSS 439
Query: 617 XEILNYGDININPENLTYKKTLNENLINEYDNSENENQH------HFNDNNKLITTEINN 456
I N DI+ N N N N N +N+ N N + + N+NN TT NN
Sbjct: 440 --INNNEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNN 497
Query: 455 DLEIYTNSNDNANTS 411
N+N+N+N++
Sbjct: 498 SNSNNNNNNNNSNSN 512
Score = 30.4 bits (67), Expect = 7.6
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = -1
Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
I+ G I T ++N N +N+ N N ++ N+NN NN+ N+
Sbjct: 421 IIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNN-------NNNNNNNNNN 473
Query: 431 NDNANTSPVCRYHKKFGNSAIN 366
N+N N++ + N+ N
Sbjct: 474 NNNNNSNSSNTNNNNINNTTNN 495
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/127 (24%), Positives = 51/127 (40%)
Frame = -1
Query: 788 NFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEI 609
N +N + + N N NN + N N+ ++ N N + N IN
Sbjct: 283 NNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINN-------- 334
Query: 608 LNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSN 429
N + N N N + T N N+ N +N+ N N ++ +NN NN+ +N+
Sbjct: 335 -NNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNN-------NNNTSNNSNTT 386
Query: 428 DNANTSP 408
T+P
Sbjct: 387 TATTTAP 393
Score = 38.1 bits (87), Expect = 0.037
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 3/177 (1%)
Frame = -1
Query: 686 LNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENEN 507
LN N + N IN I N + N N N + N N N +N+ N N
Sbjct: 267 LNSNNNNNNNNNNSNINN-------INNNNNNNSNNNNNSSNNNNNNN--NSTNNNTNNN 317
Query: 506 QHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFGNSAINCKAP--CKFKTFC 333
++ N+N INN+ N+N+NAN + GN++ N P +
Sbjct: 318 NNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNT--NNNNMGNNSNNNNNPNNNNHQNNN 375
Query: 332 RNHRKFGASAIKCITPCNFNNRFVELSYKNPQLPGNL-QIKLLPNTTPLTPEALKNY 165
N+ ++ T N S N GNL ++ L ++ P P A K++
Sbjct: 376 NNNTSNNSNTTTATTTAPGGNNLTN-SLNNAGNLGNLGRVSGLHSSDPNNPNAQKSF 431
Score = 38.1 bits (87), Expect = 0.037
Identities = 29/119 (24%), Positives = 46/119 (38%)
Frame = -1
Query: 767 SENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDIN 588
S N N NN + + + N N+ ++ N + + N N N + N
Sbjct: 269 SNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNN----------NTNNNN 318
Query: 587 INPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
N N T N N N N+ N N ++ N NN + NN+ N++ N N +
Sbjct: 319 NNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNNNN 377
Score = 37.0 bits (84), Expect = 0.082
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -1
Query: 611 ILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNS 432
ILN + N N N + +N N N +N+ N + ++ N+NN NN+ N+
Sbjct: 266 ILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNT 325
Query: 431 NDNAN 417
N+N N
Sbjct: 326 NNNNN 330
Score = 34.3 bits (77), Expect = 0.53
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -1
Query: 608 LNYGDININPENLTYKKTLNENLINEYDN---SENENQHHFNDNNKLITTEINNDLEIYT 438
L G +N N N N N IN +N + N N + N+NN T N+ T
Sbjct: 262 LGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNT 321
Query: 437 NSNDNANTSPVCRYHKKFGNSAIN 366
N+N N N + + + N+ N
Sbjct: 322 NNNTNNNNNNINNNNNNTNNNNNN 345
Score = 32.0 bits (71), Expect = 2.6
Identities = 27/102 (26%), Positives = 37/102 (36%)
Frame = -1
Query: 716 NKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLI 537
N L N + + N N + IN N N N N + N N
Sbjct: 260 NTLGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNN 319
Query: 536 NEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTS 411
N +N+ N N + N+NN NN TN+N+ N S
Sbjct: 320 NTNNNTNNNNNNI-NNNNNNTNNNNNNANNQNTNNNNMGNNS 360
Score = 30.0 bits (66), Expect = 10.0
Identities = 27/115 (23%), Positives = 41/115 (35%)
Frame = -1
Query: 800 NILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXX 621
N N N + S N NT NN + + N N++ ++ N + N N
Sbjct: 298 NSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMG 357
Query: 620 XXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINN 456
N + N NP N ++ N N N +NS +T +NN
Sbjct: 358 -----NNSNNNNNPNNNNHQ---NNNNNNTSNNSNTTTATTTAPGGNNLTNSLNN 404
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 39.7 bits (91), Expect = 0.013
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Frame = -1
Query: 605 NYGDININPENLTYKKTLNENLIN-----EYDNSENENQHHFNDNNKLITTEINNDLEIY 441
N + N N N+T + N IN +NS N N H+ N NN IN++
Sbjct: 492 NINNNNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHNNNHHNGSINSNSN-- 549
Query: 440 TNSNDNANTSPVCRYHKKFGNSAINCKAPCKFKTFCRNHRKFGASAIKCITPCNFNN 270
TN+N+N N GN++ NC + C ++ F A KC T C ++N
Sbjct: 550 TNNNNNNNN----------GNNSNNCNSNIGMGG-CGSNMPFRAGDWKCST-CTYHN 594
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
intergenic region
Length = 964
Score = 39.3 bits (90), Expect = 0.016
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -1
Query: 605 NYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSND 426
N IN N N++ K N N+ N +N+ N N + N+NN NN+ +SN+
Sbjct: 817 NPDTINNNYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNN 876
Query: 425 NANTS 411
N N +
Sbjct: 877 NNNNN 881
Score = 35.4 bits (80), Expect = 0.24
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 605 NYGDI---NINPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTN 435
NY ++ N N N+T N N N +N+ N N ++ N+NN NN+ N
Sbjct: 824 NYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNNNNNNNNN 883
Query: 434 SNDN 423
N+N
Sbjct: 884 KNNN 887
Score = 32.3 bits (72), Expect = 2.0
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 8/137 (5%)
Frame = -1
Query: 803 FNILRNFMNTSISENKNTLNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXX 624
F+ + N S + N +T+NN + ++ N N++ ++ N N
Sbjct: 803 FDFSSSKSNASNNSNPDTINNNYNNVSGKNNNNNNITNNSNNNHNN-------------- 848
Query: 623 XXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEI 444
N D N N N N N N ++S N N ++ N NN +I+N+
Sbjct: 849 ------NNNDNNNNNNN---NNNNNNNNNNSGNSSNNNNNNNNNKNNNDFGIKIDNNSPS 899
Query: 443 YTN--------SNDNAN 417
Y S DN N
Sbjct: 900 YEGFPQLQIPLSQDNLN 916
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 39.3 bits (90), Expect = 0.016
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Frame = -1
Query: 836 NHHFVAFEKLFFNILRNFMNTSISENKNTL----NNRHQLLT-DFNKLFNDLQDDLNRNL 672
N + F+K+F +I+ + + KN + + +HQ T + N ++N++ +++N N
Sbjct: 1027 NTYLDQFDKVFDHIVSISSSHLLLSYKNKIPYLPHVQHQNKTSNMNNIYNNM-NNINNND 1085
Query: 671 KQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLINEYDNSENENQHHFN 492
S N + N +IN N N+ N N+ N ++N N + H N
Sbjct: 1086 SNRSIIYNNDSNM-----------NNINNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNN 1134
Query: 491 DNNKLITTEINNDLEIYTNSNDNANTSPVCRYHKKFGNSAI 369
D+N + + NND + + N+N+N + + H N +I
Sbjct: 1135 DSN--MNSIHNNDSNMNSIHNNNSNMNNI---HNNDSNRSI 1170
Score = 36.2 bits (82), Expect = 0.14
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Frame = -1
Query: 926 LALFTNKFLKIYENFIKLMKLPKINSEEKINHHFVAFEKLFFNILRNFMNTSISENKNT- 750
+++ ++ L Y+N K+ LP + + K ++ + + NI N N SI N ++
Sbjct: 1041 VSISSSHLLLSYKN--KIPYLPHVQHQNKTSNMNNIYNNMN-NINNNDSNRSIIYNNDSN 1097
Query: 749 LNNRHQLLTDFNKLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENL 570
+NN + ++ N + N+ ++N S + N N I+ N N+
Sbjct: 1098 MNNINNNDSNMNSIHNN-NSNMNNIHNNDSNRSIIHNNDS--------NMNSIHNNDSNM 1148
Query: 569 TYKKTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVC 402
N N+ N ++N N + H ND+N + + NND N D + +C
Sbjct: 1149 NSIHNNNSNMNNIHNNDSNRSIIHNNDSN--MNSIHNNDSNNNNNYKDCTHNPYIC 1202
Score = 33.5 bits (75), Expect = 0.90
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -1
Query: 803 FNILRNFMNTS---ISENKNTLNNRHQL--LTDFNKLFNDLQDDLNRNLKQPSKCTNCEI 639
FN++ N++N + + N +NN L + D N + ND+ +++N K S+ C +
Sbjct: 453 FNVVNNYINNNCKNVRYNIKDVNNNVLLKDMCDINNMNNDINNNINNIYKNTSETNLCNV 512
Query: 638 N 636
N
Sbjct: 513 N 513
Score = 32.7 bits (73), Expect = 1.5
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Frame = -1
Query: 869 KLPKINSEEKINHHFVA----FEKLFFNIL----RNFMNTSISENKNTLNNRHQLLTDFN 714
K+ KI ++EK +H F++ + ++ N N + ++N N NN + ++ N
Sbjct: 1495 KIIKIKNKEKRKYHPKEEKENFDRNNYKMITDNNNNDNNNNNNDNNNNDNNNNNNNSNNN 1554
Query: 713 KLFNDLQDDLNRNLKQPSKCTNCEINXXXXXXXEILNYGDININPENLTYKKTLNENLIN 534
+ +L DD+N NL + TN N + N ++ N N+ K N + +
Sbjct: 1555 NYYYNLHDDVN-NLGVTNYNTNIYPNDCNGIYEKETNNNELTTN-SNMCDK---NNDFSD 1609
Query: 533 EYDNSENEN 507
E+ N+ NEN
Sbjct: 1610 EFFNNINEN 1618
Score = 32.7 bits (73), Expect = 1.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 560 KTLNENLINEYDNSENENQHHFNDNNKLITTEINNDLEIYTNSNDNANTSPVCRYH 393
K + +N N DN+ N N ++ NDNN NN+ Y N +D+ N V Y+
Sbjct: 1522 KMITDN--NNNDNNNNNNDNNNNDNNNNNNNSNNNN--YYYNLHDDVNNLGVTNYN 1573
Score = 32.3 bits (72), Expect = 2.0
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Frame = -1
Query: 590 NINPENLTYKKTLNENLINEYDNSENENQHHFN---DNNKLITTEINNDL---------E 447
N N +N N N N +N+ N N +++N D N L T N ++ E
Sbjct: 1527 NNNNDNNNNNNDNNNNDNNNNNNNSNNNNYYYNLHDDVNNLGVTNYNTNIYPNDCNGIYE 1586
Query: 446 IYTNSNDNANTSPVCRYHKKFGNSAIN 366
TN+N+ S +C + F + N
Sbjct: 1587 KETNNNELTTNSNMCDKNNDFSDEFFN 1613
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,429,991
Number of Sequences: 369166
Number of extensions: 2007240
Number of successful extensions: 8188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7072
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)