Planaria EST Database


DrC_02035

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02035
         (854 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FS31|RM02_CANGA  60S ribosomal protein L2, mitochondria...    33   1.0  
sp|Q35543|NU5M_PETMA  NADH-ubiquinone oxidoreductase chain 5...    33   1.3  
sp|P53248|PEX8_YEAST  Peroxisomal biogenesis factor 8 (Perox...    30   6.5  
>sp|Q6FS31|RM02_CANGA 60S ribosomal protein L2, mitochondrial precursor
          Length = 368

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
 Frame = +1

Query: 196 IKNGFINDNFQDSMKYLDMINEQLLS------EWLC-KANKQLHTLIEWAQDNNKFVNFT 354
           +KNGF     Q + KY     +Q+L       EW   K ++QLH L E     NK V+F+
Sbjct: 200 LKNGFDLQEAQFNAKYY---LQQMLKLKAKRKEWNEEKLSEQLHNLDETTALLNKSVSFS 256

Query: 355 NFWLVELPSTQRRELLAMEYSILQEQIKIG 444
           N W++ +P     E L  +  ++++  ++G
Sbjct: 257 NKWVI-IPYISEEEKLTRKDELIKKLTELG 285
>sp|Q35543|NU5M_PETMA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 598

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +2

Query: 29  IKTMIFLMFLINIWMNMSLIPSKQNLFTSQQFPNLILNPEI-----SHQAIIFT*NILYQ 193
           IKT+  +MF+I++ ++M L   K N  T   F  L   P I     SH ++I++  ++ Q
Sbjct: 485 IKTIALMMFIISLIISMELTNKKINQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQ 544

Query: 194 IL 199
           ++
Sbjct: 545 VM 546
>sp|P53248|PEX8_YEAST Peroxisomal biogenesis factor 8 (Peroxin-8) (Peroxisomal protein
           PAS6)
          Length = 589

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 778 LPNHSDTMYARLCIAICHEFIPT 846
           LPNH DT Y+ +C+++ H  + T
Sbjct: 305 LPNHKDTFYSMICLSLFHVHVLT 327
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,608,614
Number of Sequences: 369166
Number of extensions: 1855602
Number of successful extensions: 4871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4871
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)