Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N17
(854 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6FS31|RM02_CANGA 60S ribosomal protein L2, mitochondria... 33 1.0
sp|Q35543|NU5M_PETMA NADH-ubiquinone oxidoreductase chain 5... 33 1.3
sp|P53248|PEX8_YEAST Peroxisomal biogenesis factor 8 (Perox... 30 6.5
>sp|Q6FS31|RM02_CANGA 60S ribosomal protein L2, mitochondrial precursor
Length = 368
Score = 33.1 bits (74), Expect = 1.0
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Frame = +1
Query: 196 IKNGFINDNFQDSMKYLDMINEQLLS------EWLC-KANKQLHTLIEWAQDNNKFVNFT 354
+KNGF Q + KY +Q+L EW K ++QLH L E NK V+F+
Sbjct: 200 LKNGFDLQEAQFNAKYY---LQQMLKLKAKRKEWNEEKLSEQLHNLDETTALLNKSVSFS 256
Query: 355 NFWLVELPSTQRRELLAMEYSILQEQIKIG 444
N W++ +P E L + ++++ ++G
Sbjct: 257 NKWVI-IPYISEEEKLTRKDELIKKLTELG 285
>sp|Q35543|NU5M_PETMA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 598
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 29 IKTMIFLMFLINIWMNMSLIPSKQNLFTSQQFPNLILNPEI-----SHQAIIFT*NILYQ 193
IKT+ +MF+I++ ++M L K N T F L P I SH ++I++ ++ Q
Sbjct: 485 IKTIALMMFIISLIISMELTNKKINQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQ 544
Query: 194 IL 199
++
Sbjct: 545 VM 546
>sp|P53248|PEX8_YEAST Peroxisomal biogenesis factor 8 (Peroxin-8) (Peroxisomal protein
PAS6)
Length = 589
Score = 30.4 bits (67), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 778 LPNHSDTMYARLCIAICHEFIPT 846
LPNH DT Y+ +C+++ H + T
Sbjct: 305 LPNHKDTFYSMICLSLFHVHVLT 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,608,614
Number of Sequences: 369166
Number of extensions: 1855602
Number of successful extensions: 4871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4871
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)