Planaria EST Database


DrC_02034

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02034
         (892 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DCT5|SDF2_MOUSE  Stromal cell-derived factor 2 precurso...   211   2e-54
sp|Q99470|SDF2_HUMAN  Stromal cell-derived factor 2 precurso...   211   2e-54
sp|Q9HCN8|SDF2L_HUMAN  Stromal cell-derived factor 2-like pr...   195   1e-49
sp|Q9ESP1|SDF2L_MOUSE  Stromal cell-derived factor 2-like pr...   189   7e-48
sp|Q93ZE8|SDF2_ARATH  Stromal cell-derived factor 2-like pro...   127   4e-29
sp|P42934|PMT6_YEAST  Dolichyl-phosphate-mannose--protein ma...    62   2e-09
sp|O74189|PMT1_CANAL  Dolichyl-phosphate-mannose--protein ma...    60   8e-09
sp|Q8BGQ4|POMT2_MOUSE  Protein O-mannosyl-transferase 2 (Dol...    60   8e-09
sp|P31382|PMT2_YEAST  Dolichyl-phosphate-mannose--protein ma...    59   1e-08
sp|Q9UKY4|POMT2_HUMAN  Protein O-mannosyl-transferase 2 (Dol...    56   1e-07
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 precursor (SDF-2)
          Length = 211

 Score =  211 bits (538), Expect = 2e-54
 Identities = 101/183 (55%), Positives = 127/183 (69%)
 Frame = +2

Query: 71  NYEYVTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGST 250
           N   VTCGSV+KLLN +HNVRLHSHDV+Y               DD+NSYW++R ++ + 
Sbjct: 20  NMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATV 79

Query: 251 RNCIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQC 430
             C RG PIKCGQ IRL H++TGRNLHSHHFTSPL+ N EVSAFGE G GD  DDW + C
Sbjct: 80  --CERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137

Query: 431 NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFV 610
           N G YW+R+  +  KHS+T   L+V GE+YGRPI GQ E+  +++ S+   W A EG+F+
Sbjct: 138 N-GPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFM 196

Query: 611 KPS 619
           KPS
Sbjct: 197 KPS 199
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 precursor (SDF-2)
          Length = 211

 Score =  211 bits (537), Expect = 2e-54
 Identities = 100/179 (55%), Positives = 126/179 (70%)
 Frame = +2

Query: 83  VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
           VTCGSV+KLLN +HNVRLHSHDV+Y               DD+NSYW++R +S +   C 
Sbjct: 24  VTCGSVVKLLNTRHNVRLHSHDVRYGSSSGQQSVTGVTSVDDSNSYWRIRRKSATV--CE 81

Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGT 442
           RG PIKCGQ IRL H++TGRNLHSHHFTSPL+ N EV+AFGE G GD  DDW + CN G 
Sbjct: 82  RGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVTAFGEEGEGDYLDDWTVLCN-GP 140

Query: 443 YWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKPS 619
           YW+R+  +  KHS+T   L+V GE+YGRPI GQ E+  +++ S+   W A EG+F+KPS
Sbjct: 141 YWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPS 199
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 precursor (SDF2-like
           protein 1) (PWP1-interacting protein 8)
          Length = 221

 Score =  195 bits (496), Expect = 1e-49
 Identities = 94/197 (47%), Positives = 125/197 (63%)
 Frame = +2

Query: 77  EYVTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRN 256
           E VTCGSVLKLLN  H VRLHSHD+KY               DD NSYW++R   GS   
Sbjct: 34  ELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIR--GGSEGG 91

Query: 257 CIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNG 436
           C RG P++CGQ +RL H+ TG+NLH+HHF SPL++N EVSAFGE+G GD+ D W ++C+ 
Sbjct: 92  CPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCS- 150

Query: 437 GTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKP 616
           G +W R   +  +H  T  +L+V GE+YG PI GQ E+  +   +    W A EG+F+KP
Sbjct: 151 GQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFIKP 210

Query: 617 SLESNLTESNMSAHEEL 667
           S+E +      + H+EL
Sbjct: 211 SVEPS------AGHDEL 221
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 precursor (SDF2 like
           protein 1)
          Length = 221

 Score =  189 bits (481), Expect = 7e-48
 Identities = 91/195 (46%), Positives = 122/195 (62%)
 Frame = +2

Query: 83  VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
           VTCGSVLKLLN  H VRLHSHD+KY               DD NSYW++R   GS   C 
Sbjct: 36  VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIR--GGSEGGCP 93

Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGT 442
           RG P++CGQ +RL H+ TG+NLH+HHF SPL++N EVSAFGE+G GD+ D W ++C+ G 
Sbjct: 94  RGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCS-GQ 152

Query: 443 YWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKPSL 622
           +W R   +  +H  T  +L+V GE+YG PI GQ E+  +   +    W A EG+F+KP  
Sbjct: 153 HWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFIKPGA 212

Query: 623 ESNLTESNMSAHEEL 667
           + +      + H+EL
Sbjct: 213 DLS------TGHDEL 221
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein precursor (SDF2-like
           protein)
          Length = 218

 Score =  127 bits (319), Expect = 4e-29
 Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
 Frame = +2

Query: 83  VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
           +T GS +KL++ +   RLHSHDV Y                D+NSYW V+   G+T    
Sbjct: 37  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEK-- 94

Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNG-G 439
           +G  +K G TIRL H+ T + LHSH   SP++ NLEVS FG++ + D GD W +   G G
Sbjct: 95  QGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSG 154

Query: 440 TYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFV 610
             W +++ + L+H +T  YL+ + ++Y R   GQ E+  I  +     W+AAEGV++
Sbjct: 155 KTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYL 211

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +2

Query: 266 GKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGTY 445
           G  I  G  I+LMH  T   LHSH      + + + S  G  G  D    WI++   GT 
Sbjct: 34  GVEITYGSAIKLMHEKTKFRLHSHDVPYG-SGSGQQSVTGFPGVVDSNSYWIVKPVPGTT 92

Query: 446 WLRNE------YINLKHSNTHSYLNVNGERYGRPIEGQAEISC 556
             + +       I L+H  T  +L  +   +  PI G  E+SC
Sbjct: 93  EKQGDAVKSGATIRLQHMKTRKWL--HSHLHASPISGNLEVSC 133
>sp|P42934|PMT6_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 6
          Length = 759

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 54/175 (30%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
 Frame = +2

Query: 134 LHSHDVKYXXXXXXXXXXXXXXXDDNNSY-WQVRERSG---STRNCIRGK--PIKCGQTI 295
           LHSH   Y               D NN + ++    SG        + GK  PI  G  +
Sbjct: 361 LHSHIQVYPEGSGQRQITGYGFADSNNVWKFEFSRSSGLELDQNGTLNGKIIPITDGVEV 420

Query: 296 RLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDWIIQC-------------- 430
           RL H +TG NLHSH   S ++  N EVS +G    GDE DDWI++               
Sbjct: 421 RLSHKNTGSNLHSHDVPSHVSRGNYEVSGYGSQSVGDEKDDWIVEIVKQMDSPNPVYSNE 480

Query: 431 NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISC---ISRQSRATEW 586
           N       + +  L+H     YL   G  Y      QAEI C    SR+ ++T W
Sbjct: 481 NSTILHPVSTFFRLRHKVLGCYLASTGLTYPAWGFKQAEIVCKDSWSRRDKSTWW 535
>sp|O74189|PMT1_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 1
          Length = 877

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 15/185 (8%)
 Frame = +2

Query: 77  EYVTCGSVLKLLNAQ-HNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTR 253
           E V  GSV+ + +       LHSH+  Y               D NN  W +   +G+  
Sbjct: 341 EQVGLGSVVTIRHVDTQGGYLHSHEHFYQTGSKQQQITLYPHLDSNNK-WLIEPYNGTIH 399

Query: 254 NCIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTH---NLEVSAFGENG-SGDEGDDWI 421
           N     P+  G  IRL H++TGR LHSH    P++      E S +G +G +GD  DDW+
Sbjct: 400 N-ETFVPLINGMKIRLKHINTGRRLHSHDEKPPVSERDWQKECSCYGYDGFAGDANDDWV 458

Query: 422 I-------QCNGGTYWLR--NEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSR 574
           +       Q      +++  N    L+H+ T  YL  +  +      GQ E++  S+  R
Sbjct: 459 VEIVNYRSQKGEAQTFVKAINTIFRLRHAMTGHYLFSSEVKLPEWGFGQQEVTSASQGKR 518

Query: 575 A-TEW 586
           A T W
Sbjct: 519 ALTHW 523
>sp|Q8BGQ4|POMT2_MOUSE Protein O-mannosyl-transferase 2 (Dolichyl-phosphate-mannose--protein
            mannosyltransferase 2)
          Length = 820

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
 Frame = +2

Query: 77   EYVTCGSVLKLLNAQHNVR-LHSHDVKYXXXXXXXXXXXXXXXD-DNNSYWQVRERSGST 250
            E++  GSV+ + N +  +  LHSH   Y                 D N+ W +++ + +T
Sbjct: 405  EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKYNANT 464

Query: 251  RNCIRGKPIKC---GQTIRLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDW 418
                   P++    G  IRL H  T RNLHSH+  +PLT  + +V+ +G NG+GD  D W
Sbjct: 465  DPLDPSFPVEFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGYGINGTGDSNDFW 524

Query: 419  IIQC----NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATE- 583
             I+      G    +    I L H  T   L  +G+   +    Q E++C       T  
Sbjct: 525  RIEVVNRKFGNRIKVLRSRIRLIHLVTGCVLGSSGKILPKWGWEQLEVTCTPYLKETTNS 584

Query: 584  -WIAAEGV----------FVKPSLESNLTESNM 649
             W   E +           ++PS    L ES+M
Sbjct: 585  IWNIEEHINPKLPNISLDVLQPSFPEILLESHM 617
>sp|P31382|PMT2_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 2
          Length = 759

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
 Frame = +2

Query: 134 LHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERS--GSTRNCIRGKPIKCGQTIRLMH 307
           LHSH   Y               D NN ++  RER     + N    + +K G + RL+H
Sbjct: 361 LHSHIQTYPDGSNQQQVTCYGYKDANNEWFFNRERGLPSWSENETDIEYLKPGTSYRLVH 420

Query: 308 LSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDWIIQ 427
            STGRNLH+H   +P++    EVS +G+N  GD  D+W+I+
Sbjct: 421 KSTGRNLHTHPVAAPVSKTQWEVSGYGDNVVGDNKDNWVIE 461
>sp|Q9UKY4|POMT2_HUMAN Protein O-mannosyl-transferase 2
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           2)
          Length = 750

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
 Frame = +2

Query: 77  EYVTCGSVLKLLNAQHNVR-LHSHDVKYXXXXXXXXXXXXXXXD-DNNSYWQVRERSGST 250
           E++  GSV+ + N +  +  LHSH   Y                 D N+ W +++ + ++
Sbjct: 335 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKHNTNS 394

Query: 251 RNCIRGKPIKC---GQTIRLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDW 418
                  P++    G  IRL H  T RNLHSH+  +P+T  + +V+ +G NG+GD  D W
Sbjct: 395 DPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFW 454

Query: 419 IIQ 427
            I+
Sbjct: 455 RIE 457
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,665,381
Number of Sequences: 369166
Number of extensions: 1868768
Number of successful extensions: 4357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)