Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N08
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 precurso... 211 2e-54
sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 precurso... 211 2e-54
sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like pr... 195 1e-49
sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like pr... 189 7e-48
sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like pro... 127 4e-29
sp|P42934|PMT6_YEAST Dolichyl-phosphate-mannose--protein ma... 62 2e-09
sp|O74189|PMT1_CANAL Dolichyl-phosphate-mannose--protein ma... 60 8e-09
sp|Q8BGQ4|POMT2_MOUSE Protein O-mannosyl-transferase 2 (Dol... 60 8e-09
sp|P31382|PMT2_YEAST Dolichyl-phosphate-mannose--protein ma... 59 1e-08
sp|Q9UKY4|POMT2_HUMAN Protein O-mannosyl-transferase 2 (Dol... 56 1e-07
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 precursor (SDF-2)
Length = 211
Score = 211 bits (538), Expect = 2e-54
Identities = 101/183 (55%), Positives = 127/183 (69%)
Frame = +2
Query: 71 NYEYVTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGST 250
N VTCGSV+KLLN +HNVRLHSHDV+Y DD+NSYW++R ++ +
Sbjct: 20 NMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATV 79
Query: 251 RNCIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQC 430
C RG PIKCGQ IRL H++TGRNLHSHHFTSPL+ N EVSAFGE G GD DDW + C
Sbjct: 80 --CERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137
Query: 431 NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFV 610
N G YW+R+ + KHS+T L+V GE+YGRPI GQ E+ +++ S+ W A EG+F+
Sbjct: 138 N-GPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFM 196
Query: 611 KPS 619
KPS
Sbjct: 197 KPS 199
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 precursor (SDF-2)
Length = 211
Score = 211 bits (537), Expect = 2e-54
Identities = 100/179 (55%), Positives = 126/179 (70%)
Frame = +2
Query: 83 VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
VTCGSV+KLLN +HNVRLHSHDV+Y DD+NSYW++R +S + C
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSSSGQQSVTGVTSVDDSNSYWRIRRKSATV--CE 81
Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGT 442
RG PIKCGQ IRL H++TGRNLHSHHFTSPL+ N EV+AFGE G GD DDW + CN G
Sbjct: 82 RGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVTAFGEEGEGDYLDDWTVLCN-GP 140
Query: 443 YWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKPS 619
YW+R+ + KHS+T L+V GE+YGRPI GQ E+ +++ S+ W A EG+F+KPS
Sbjct: 141 YWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPS 199
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 precursor (SDF2-like
protein 1) (PWP1-interacting protein 8)
Length = 221
Score = 195 bits (496), Expect = 1e-49
Identities = 94/197 (47%), Positives = 125/197 (63%)
Frame = +2
Query: 77 EYVTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRN 256
E VTCGSVLKLLN H VRLHSHD+KY DD NSYW++R GS
Sbjct: 34 ELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIR--GGSEGG 91
Query: 257 CIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNG 436
C RG P++CGQ +RL H+ TG+NLH+HHF SPL++N EVSAFGE+G GD+ D W ++C+
Sbjct: 92 CPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCS- 150
Query: 437 GTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKP 616
G +W R + +H T +L+V GE+YG PI GQ E+ + + W A EG+F+KP
Sbjct: 151 GQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFIKP 210
Query: 617 SLESNLTESNMSAHEEL 667
S+E + + H+EL
Sbjct: 211 SVEPS------AGHDEL 221
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 precursor (SDF2 like
protein 1)
Length = 221
Score = 189 bits (481), Expect = 7e-48
Identities = 91/195 (46%), Positives = 122/195 (62%)
Frame = +2
Query: 83 VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
VTCGSVLKLLN H VRLHSHD+KY DD NSYW++R GS C
Sbjct: 36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIR--GGSEGGCP 93
Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGT 442
RG P++CGQ +RL H+ TG+NLH+HHF SPL++N EVSAFGE+G GD+ D W ++C+ G
Sbjct: 94 RGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCS-GQ 152
Query: 443 YWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFVKPSL 622
+W R + +H T +L+V GE+YG PI GQ E+ + + W A EG+F+KP
Sbjct: 153 HWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFIKPGA 212
Query: 623 ESNLTESNMSAHEEL 667
+ + + H+EL
Sbjct: 213 DLS------TGHDEL 221
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein precursor (SDF2-like
protein)
Length = 218
Score = 127 bits (319), Expect = 4e-29
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Frame = +2
Query: 83 VTCGSVLKLLNAQHNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTRNCI 262
+T GS +KL++ + RLHSHDV Y D+NSYW V+ G+T
Sbjct: 37 ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEK-- 94
Query: 263 RGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNG-G 439
+G +K G TIRL H+ T + LHSH SP++ NLEVS FG++ + D GD W + G G
Sbjct: 95 QGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSG 154
Query: 440 TYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATEWIAAEGVFV 610
W +++ + L+H +T YL+ + ++Y R GQ E+ I + W+AAEGV++
Sbjct: 155 KTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYL 211
Score = 38.5 bits (88), Expect = 0.025
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = +2
Query: 266 GKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTHNLEVSAFGENGSGDEGDDWIIQCNGGTY 445
G I G I+LMH T LHSH + + + S G G D WI++ GT
Sbjct: 34 GVEITYGSAIKLMHEKTKFRLHSHDVPYG-SGSGQQSVTGFPGVVDSNSYWIVKPVPGTT 92
Query: 446 WLRNE------YINLKHSNTHSYLNVNGERYGRPIEGQAEISC 556
+ + I L+H T +L + + PI G E+SC
Sbjct: 93 EKQGDAVKSGATIRLQHMKTRKWL--HSHLHASPISGNLEVSC 133
>sp|P42934|PMT6_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 6
Length = 759
Score = 62.4 bits (150), Expect = 2e-09
Identities = 54/175 (30%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Frame = +2
Query: 134 LHSHDVKYXXXXXXXXXXXXXXXDDNNSY-WQVRERSG---STRNCIRGK--PIKCGQTI 295
LHSH Y D NN + ++ SG + GK PI G +
Sbjct: 361 LHSHIQVYPEGSGQRQITGYGFADSNNVWKFEFSRSSGLELDQNGTLNGKIIPITDGVEV 420
Query: 296 RLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDWIIQC-------------- 430
RL H +TG NLHSH S ++ N EVS +G GDE DDWI++
Sbjct: 421 RLSHKNTGSNLHSHDVPSHVSRGNYEVSGYGSQSVGDEKDDWIVEIVKQMDSPNPVYSNE 480
Query: 431 NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISC---ISRQSRATEW 586
N + + L+H YL G Y QAEI C SR+ ++T W
Sbjct: 481 NSTILHPVSTFFRLRHKVLGCYLASTGLTYPAWGFKQAEIVCKDSWSRRDKSTWW 535
>sp|O74189|PMT1_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 1
Length = 877
Score = 60.1 bits (144), Expect = 8e-09
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 15/185 (8%)
Frame = +2
Query: 77 EYVTCGSVLKLLNAQ-HNVRLHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERSGSTR 253
E V GSV+ + + LHSH+ Y D NN W + +G+
Sbjct: 341 EQVGLGSVVTIRHVDTQGGYLHSHEHFYQTGSKQQQITLYPHLDSNNK-WLIEPYNGTIH 399
Query: 254 NCIRGKPIKCGQTIRLMHLSTGRNLHSHHFTSPLTH---NLEVSAFGENG-SGDEGDDWI 421
N P+ G IRL H++TGR LHSH P++ E S +G +G +GD DDW+
Sbjct: 400 N-ETFVPLINGMKIRLKHINTGRRLHSHDEKPPVSERDWQKECSCYGYDGFAGDANDDWV 458
Query: 422 I-------QCNGGTYWLR--NEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSR 574
+ Q +++ N L+H+ T YL + + GQ E++ S+ R
Sbjct: 459 VEIVNYRSQKGEAQTFVKAINTIFRLRHAMTGHYLFSSEVKLPEWGFGQQEVTSASQGKR 518
Query: 575 A-TEW 586
A T W
Sbjct: 519 ALTHW 523
>sp|Q8BGQ4|POMT2_MOUSE Protein O-mannosyl-transferase 2 (Dolichyl-phosphate-mannose--protein
mannosyltransferase 2)
Length = 820
Score = 60.1 bits (144), Expect = 8e-09
Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Frame = +2
Query: 77 EYVTCGSVLKLLNAQHNVR-LHSHDVKYXXXXXXXXXXXXXXXD-DNNSYWQVRERSGST 250
E++ GSV+ + N + + LHSH Y D N+ W +++ + +T
Sbjct: 405 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKYNANT 464
Query: 251 RNCIRGKPIKC---GQTIRLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDW 418
P++ G IRL H T RNLHSH+ +PLT + +V+ +G NG+GD D W
Sbjct: 465 DPLDPSFPVEFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGYGINGTGDSNDFW 524
Query: 419 IIQC----NGGTYWLRNEYINLKHSNTHSYLNVNGERYGRPIEGQAEISCISRQSRATE- 583
I+ G + I L H T L +G+ + Q E++C T
Sbjct: 525 RIEVVNRKFGNRIKVLRSRIRLIHLVTGCVLGSSGKILPKWGWEQLEVTCTPYLKETTNS 584
Query: 584 -WIAAEGV----------FVKPSLESNLTESNM 649
W E + ++PS L ES+M
Sbjct: 585 IWNIEEHINPKLPNISLDVLQPSFPEILLESHM 617
>sp|P31382|PMT2_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 2
Length = 759
Score = 59.3 bits (142), Expect = 1e-08
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +2
Query: 134 LHSHDVKYXXXXXXXXXXXXXXXDDNNSYWQVRERS--GSTRNCIRGKPIKCGQTIRLMH 307
LHSH Y D NN ++ RER + N + +K G + RL+H
Sbjct: 361 LHSHIQTYPDGSNQQQVTCYGYKDANNEWFFNRERGLPSWSENETDIEYLKPGTSYRLVH 420
Query: 308 LSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDWIIQ 427
STGRNLH+H +P++ EVS +G+N GD D+W+I+
Sbjct: 421 KSTGRNLHTHPVAAPVSKTQWEVSGYGDNVVGDNKDNWVIE 461
>sp|Q9UKY4|POMT2_HUMAN Protein O-mannosyl-transferase 2
(Dolichyl-phosphate-mannose--protein mannosyltransferase
2)
Length = 750
Score = 56.2 bits (134), Expect = 1e-07
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Frame = +2
Query: 77 EYVTCGSVLKLLNAQHNVR-LHSHDVKYXXXXXXXXXXXXXXXD-DNNSYWQVRERSGST 250
E++ GSV+ + N + + LHSH Y D N+ W +++ + ++
Sbjct: 335 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKHNTNS 394
Query: 251 RNCIRGKPIKC---GQTIRLMHLSTGRNLHSHHFTSPLTH-NLEVSAFGENGSGDEGDDW 418
P++ G IRL H T RNLHSH+ +P+T + +V+ +G NG+GD D W
Sbjct: 395 DPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFW 454
Query: 419 IIQ 427
I+
Sbjct: 455 RIE 457
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,665,381
Number of Sequences: 369166
Number of extensions: 1868768
Number of successful extensions: 4357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)