Planaria EST Database


DrC_02028

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02028
         (289 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47991|RL6_CAEEL  60S ribosomal protein L6                      83   2e-16
sp|Q58DQ3|RL6_BOVIN  60S ribosomal protein L6                      75   6e-14
sp|P47911|RL6_MOUSE  60S ribosomal protein L6 (TAX-responsiv...    74   1e-13
sp|P21533|RL6_RAT  60S ribosomal protein L6 (Neoplasm-relate...    74   1e-13
sp|Q02878|RL6_HUMAN  60S ribosomal protein L6 (TAX-responsiv...    72   3e-13
sp|Q6QMZ4|RL6_CHILA  60S ribosomal protein L6                      72   3e-13
sp|P79071|RL6_SCHPO  60S ribosomal protein L6                      63   2e-10
sp|P34091|RL6_MESCR  60S ribosomal protein L6 (YL16-like)          62   5e-10
sp|Q02326|RL6A_YEAST  60S ribosomal protein L6-A (L17) (YL16...    53   2e-07
sp|P05739|RL6B_YEAST  60S ribosomal protein L6-B (L17) (YL16...    51   7e-07
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6
          Length = 217

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 41/86 (47%), Positives = 55/86 (63%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKEDKPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKARE 180
           SG++IPE I+D YF ++   ++  ++IFAS K EY + E+RK D KT+DA I+ AIK   
Sbjct: 132 SGVKIPEHINDEYFKRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHP 191

Query: 181 DKGFLVKYLRTLFSLSHGDKPHKMTF 258
           +  FL  YL T FSL     PHKM F
Sbjct: 192 EHKFLFGYLGTRFSLGKNQYPHKMQF 217
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6
          Length = 287

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           SG++IPE + D YF K+   KP+ +  +IF +++E+Y + E+RK DQK +D+ I++ IKA
Sbjct: 203 SGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKA 262

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
                 L  YLR++F+L++G  PHK+ F
Sbjct: 263 VPQ---LQGYLRSVFALTNGIYPHKVVF 287
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 (TAX-responsive enhancer element binding
           protein 107) (TAXREB107)
          Length = 296

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           S ++IP+ + DAYF K+   KP+ +  +IF ++KE+Y + E+RKADQK +D  I+  IKA
Sbjct: 212 SDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKA 271

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
                 L  YLR+ FSL++G  PHK+ F
Sbjct: 272 VPQ---LQGYLRSQFSLTNGMYPHKLVF 296
>sp|P21533|RL6_RAT 60S ribosomal protein L6 (Neoplasm-related protein C140)
          Length = 298

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           S ++IP+ + DAYF K+   KP+ +  +IF ++KE+Y + E+RKADQK +D+ I+  IKA
Sbjct: 214 SKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKA 273

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
                 L  YLR+ FSL++G  PHK+ F
Sbjct: 274 VPQ---LQGYLRSQFSLTNGMYPHKLVF 298
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 (TAX-responsive enhancer element binding
           protein 107) (TAXREB107) (Neoplasm-related protein C140)
          Length = 288

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           S ++IP+ + DAYF K+   KP+ +  +IF ++KE+Y + E+RK DQK +D+ I+  IKA
Sbjct: 204 SNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKA 263

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
                 L  YLR++F+L++G  PHK+ F
Sbjct: 264 IPQ---LQGYLRSVFALTNGIYPHKLVF 288
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6
          Length = 288

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           S ++IP+ + DAYF K+   KP+ +  +IF ++KE Y + E+RK DQK +D+ I+  IKA
Sbjct: 204 SNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQILPKIKA 263

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
                 L  YLR++F+L++G  PHK+ F
Sbjct: 264 VPQ---LRGYLRSVFALTNGIYPHKLVF 288
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6
          Length = 195

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKEDK--PKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
           SG+ + E+   AYFAK+ +  P +K E  FA    +  L  ER ADQK +DA ++ AIKA
Sbjct: 112 SGVSV-EKFTKAYFAKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKA 170

Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
             +   + +YL   F+LS+GD+PH M F
Sbjct: 171 IPN---MKEYLAASFALSNGDRPHLMKF 195
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 (YL16-like)
          Length = 234

 Score = 61.6 bits (148), Expect = 5e-10
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1   SGIEIPERIDDAYFAKE-DKPKEKSEDIF--ASKKEEYVLKEERKADQKTIDAGIIKAIK 171
           SG+ + E+ DD YF K+ +K  +K E  F  A KKE  VL +E+K DQK +D  ++KAI+
Sbjct: 150 SGVNV-EKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIE 208

Query: 172 AREDKGFLVKYLRTLFSLSHGDKPHKMTF 258
              +   L  YL   FSL  G KPH++ F
Sbjct: 209 GVPE---LKAYLGARFSLKAGMKPHELVF 234
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A (L17) (YL16) (RP18)
          Length = 176

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 19  ERIDDAYFAKED-KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKAREDKGFL 195
           E+ +  YFAKE    KEK E     +++   +K ER  DQK +D  +I  IK       L
Sbjct: 99  EKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTP---LL 155

Query: 196 VKYLRTLFSLSHGDKPHKMTF 258
            +YL   FSL +GDKPH + F
Sbjct: 156 KQYLSASFSLKNGDKPHMLKF 176
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B (L17) (YL16) (RP18)
          Length = 176

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 19  ERIDDAYFAKED-KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKAREDKGFL 195
           E+ +  YFAKE    KEK E     +++   +K ER  DQK +D  ++  IK       L
Sbjct: 99  EKFNVEYFAKEKLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTP---LL 155

Query: 196 VKYLRTLFSLSHGDKPHKMTF 258
            +YL   FSL +GDKPH + F
Sbjct: 156 KQYLSASFSLKNGDKPHLLKF 176
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,678,751
Number of Sequences: 369166
Number of extensions: 513388
Number of successful extensions: 2075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)