Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L16
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47991|RL6_CAEEL 60S ribosomal protein L6 83 2e-16
sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 75 6e-14
sp|P47911|RL6_MOUSE 60S ribosomal protein L6 (TAX-responsiv... 74 1e-13
sp|P21533|RL6_RAT 60S ribosomal protein L6 (Neoplasm-relate... 74 1e-13
sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 (TAX-responsiv... 72 3e-13
sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 72 3e-13
sp|P79071|RL6_SCHPO 60S ribosomal protein L6 63 2e-10
sp|P34091|RL6_MESCR 60S ribosomal protein L6 (YL16-like) 62 5e-10
sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A (L17) (YL16... 53 2e-07
sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B (L17) (YL16... 51 7e-07
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6
Length = 217
Score = 83.2 bits (204), Expect = 2e-16
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKEDKPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKARE 180
SG++IPE I+D YF ++ ++ ++IFAS K EY + E+RK D KT+DA I+ AIK
Sbjct: 132 SGVKIPEHINDEYFKRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHP 191
Query: 181 DKGFLVKYLRTLFSLSHGDKPHKMTF 258
+ FL YL T FSL PHKM F
Sbjct: 192 EHKFLFGYLGTRFSLGKNQYPHKMQF 217
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6
Length = 287
Score = 74.7 bits (182), Expect = 6e-14
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
SG++IPE + D YF K+ KP+ + +IF +++E+Y + E+RK DQK +D+ I++ IKA
Sbjct: 203 SGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKA 262
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
L YLR++F+L++G PHK+ F
Sbjct: 263 VPQ---LQGYLRSVFALTNGIYPHKVVF 287
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 (TAX-responsive enhancer element binding
protein 107) (TAXREB107)
Length = 296
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
S ++IP+ + DAYF K+ KP+ + +IF ++KE+Y + E+RKADQK +D I+ IKA
Sbjct: 212 SDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKA 271
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
L YLR+ FSL++G PHK+ F
Sbjct: 272 VPQ---LQGYLRSQFSLTNGMYPHKLVF 296
>sp|P21533|RL6_RAT 60S ribosomal protein L6 (Neoplasm-related protein C140)
Length = 298
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
S ++IP+ + DAYF K+ KP+ + +IF ++KE+Y + E+RKADQK +D+ I+ IKA
Sbjct: 214 SKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKA 273
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
L YLR+ FSL++G PHK+ F
Sbjct: 274 VPQ---LQGYLRSQFSLTNGMYPHKLVF 298
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 (TAX-responsive enhancer element binding
protein 107) (TAXREB107) (Neoplasm-related protein C140)
Length = 288
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
S ++IP+ + DAYF K+ KP+ + +IF ++KE+Y + E+RK DQK +D+ I+ IKA
Sbjct: 204 SNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKA 263
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
L YLR++F+L++G PHK+ F
Sbjct: 264 IPQ---LQGYLRSVFALTNGIYPHKLVF 288
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6
Length = 288
Score = 72.4 bits (176), Expect = 3e-13
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKED--KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
S ++IP+ + DAYF K+ KP+ + +IF ++KE Y + E+RK DQK +D+ I+ IKA
Sbjct: 204 SNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQILPKIKA 263
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
L YLR++F+L++G PHK+ F
Sbjct: 264 VPQ---LRGYLRSVFALTNGIYPHKLVF 288
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6
Length = 195
Score = 62.8 bits (151), Expect = 2e-10
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKEDK--PKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKA 174
SG+ + E+ AYFAK+ + P +K E FA + L ER ADQK +DA ++ AIKA
Sbjct: 112 SGVSV-EKFTKAYFAKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKA 170
Query: 175 REDKGFLVKYLRTLFSLSHGDKPHKMTF 258
+ + +YL F+LS+GD+PH M F
Sbjct: 171 IPN---MKEYLAASFALSNGDRPHLMKF 195
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 (YL16-like)
Length = 234
Score = 61.6 bits (148), Expect = 5e-10
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 SGIEIPERIDDAYFAKE-DKPKEKSEDIF--ASKKEEYVLKEERKADQKTIDAGIIKAIK 171
SG+ + E+ DD YF K+ +K +K E F A KKE VL +E+K DQK +D ++KAI+
Sbjct: 150 SGVNV-EKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIE 208
Query: 172 AREDKGFLVKYLRTLFSLSHGDKPHKMTF 258
+ L YL FSL G KPH++ F
Sbjct: 209 GVPE---LKAYLGARFSLKAGMKPHELVF 234
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A (L17) (YL16) (RP18)
Length = 176
Score = 52.8 bits (125), Expect = 2e-07
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 ERIDDAYFAKED-KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKAREDKGFL 195
E+ + YFAKE KEK E +++ +K ER DQK +D +I IK L
Sbjct: 99 EKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTP---LL 155
Query: 196 VKYLRTLFSLSHGDKPHKMTF 258
+YL FSL +GDKPH + F
Sbjct: 156 KQYLSASFSLKNGDKPHMLKF 176
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B (L17) (YL16) (RP18)
Length = 176
Score = 51.2 bits (121), Expect = 7e-07
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 ERIDDAYFAKED-KPKEKSEDIFASKKEEYVLKEERKADQKTIDAGIIKAIKAREDKGFL 195
E+ + YFAKE KEK E +++ +K ER DQK +D ++ IK L
Sbjct: 99 EKFNVEYFAKEKLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTP---LL 155
Query: 196 VKYLRTLFSLSHGDKPHKMTF 258
+YL FSL +GDKPH + F
Sbjct: 156 KQYLSASFSLKNGDKPHLLKF 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,678,751
Number of Sequences: 369166
Number of extensions: 513388
Number of successful extensions: 2075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)