Planaria EST Database


DrC_02022

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02022
         (394 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31930|UQCR1_HUMAN  Ubiquinol-cytochrome-c reductase comp...   112   3e-25
sp|Q9CZ13|UQCR1_MOUSE  Ubiquinol-cytochrome-c reductase comp...   111   5e-25
sp|P31800|UQCR1_BOVIN  Ubiquinol-cytochrome-c reductase comp...   110   1e-24
sp|Q9CXT8|MPPB_MOUSE  Mitochondrial processing peptidase bet...   107   9e-24
sp|O75439|MPPB_HUMAN  Mitochondrial processing peptidase bet...   107   1e-23
sp|Q03346|MPPB_RAT  Mitochondrial processing peptidase beta ...   100   1e-21
sp|P11913|MPPB_NEUCR  Mitochondrial processing peptidase bet...    80   2e-15
sp|Q00302|MPPB_BLAEM  Mitochondrial processing peptidase bet...    79   3e-15
sp|Q9Y8B5|MPPB_LENED  Mitochondrial processing peptidase bet...    77   1e-14
sp|Q9P7X1|MPPB_SCHPO  Probable mitochondrial processing pept...    73   2e-13
>sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  112 bits (280), Expect = 3e-25
 Identities = 50/104 (48%), Positives = 71/104 (68%)
 Frame = +2

Query: 44  IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
           +RLC++ TE EV R K+ L+N L++ L+ +   C++I R L+ YGRR+PL E  ++I  V
Sbjct: 377 MRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV 436

Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
           +A  +R + + YIYD+CP VA YGPIE L DYN IR    WLR+
Sbjct: 437 DASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480
>sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  111 bits (278), Expect = 5e-25
 Identities = 49/104 (47%), Positives = 70/104 (67%)
 Frame = +2

Query: 44  IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
           +RLC++ TE EV R K+ L+N L++ L+ +   C++I R L+ YGRR+PL E  ++I  V
Sbjct: 377 MRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEV 436

Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
           +A  +R + + Y YD+CP VA YGPIE L DYN IR    WLR+
Sbjct: 437 DAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480
>sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase complex core protein I,
           mitochondrial precursor
          Length = 480

 Score =  110 bits (274), Expect = 1e-24
 Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
 Frame = +2

Query: 14  HLNPDNM-----NRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYG 178
           H++ D+M      + +RLC++ TE EV R K+ L+N L++ L+ +   C++I R L+ YG
Sbjct: 362 HMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYG 421

Query: 179 RRVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
           RR+PL E  ++I  V+A  +R V + Y YD+CP VA +GPIE L DYN IR    WLR+
Sbjct: 422 RRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  107 bits (267), Expect = 9e-24
 Identities = 49/106 (46%), Positives = 72/106 (67%)
 Frame = +2

Query: 35  NRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQI 214
           N   RLC+++TE EV RAK+ LK  ++  L+ S   C++I RQ++ Y RR+P+ EL  +I
Sbjct: 383 NEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARI 442

Query: 215 DSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
           D+V+A+T+R V   YI+DK P +AA GPIE L D+N I  +  W+R
Sbjct: 443 DAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488
>sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  107 bits (266), Expect = 1e-23
 Identities = 48/103 (46%), Positives = 72/103 (69%)
 Frame = +2

Query: 44  IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
           +RLC+++TE EV RA++ LK  ++  L+ S   C++I RQ++ Y RR+P+ EL  +ID+V
Sbjct: 386 MRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAV 445

Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
           NA+TIR V   YIY++ P +AA GPI+ L D+  IR +  WLR
Sbjct: 446 NAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488
>sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (P-52)
          Length = 489

 Score =  100 bits (248), Expect = 1e-21
 Identities = 46/103 (44%), Positives = 68/103 (66%)
 Frame = +2

Query: 44  IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
           +RLC+ ++E EV RAK+ LK  ++  L+ S   C++I RQ++ Y RR+P+ EL  +ID+V
Sbjct: 386 MRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAV 445

Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
           +A+ +R V   YIY K P +AA GPIE L D+N I  +  W R
Sbjct: 446 DAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488
>sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (Ubiquinol-cytochrome-c reductase
           complex core protein I)
          Length = 476

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 40/110 (36%), Positives = 67/110 (60%)
 Frame = +2

Query: 2   EEIIHLNPDNMNRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGR 181
           ++++H +   +    RLCSN++E EV RAK+ LK  ++ SL+ + +  ++I RQ++  GR
Sbjct: 362 DDLVHFS---LREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGR 418

Query: 182 RVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIR 331
           R+   E+   ID+V+A  +    N  I+D+   ++A G IEGL DY  IR
Sbjct: 419 RMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDYARIR 468
>sp|Q00302|MPPB_BLAEM Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP) (BeMPP1)
          Length = 465

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 40/104 (38%), Positives = 62/104 (59%)
 Frame = +2

Query: 44  IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
           +RL +  +E EV  AK  LK  L+ +L+ +    +EI RQ++ YGRR+   E+   +D+V
Sbjct: 362 MRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAV 421

Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
             + ++ V N +IYD+   + A GP+E L DYN IR +   LRY
Sbjct: 422 TVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465
>sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase beta subunit, mitochondrial
           precursor (Beta-MPP)
          Length = 466

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 38/97 (39%), Positives = 61/97 (62%)
 Frame = +2

Query: 65  TEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSVNADTIRT 244
           TE EV RAKS LK  L+ SL+ + +  ++I RQ++  G+R+   ++ N +D+V+ D I+ 
Sbjct: 370 TEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKR 429

Query: 245 VVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
           V   Y++DK   +AA+G I+GL DY  IR   + + Y
Sbjct: 430 VAQKYLWDKDFALAAFGNIDGLKDYGRIRNDMSSMLY 466
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing peptidase beta subunit,
           mitochondrial precursor (Beta-MPP) (PEP)
          Length = 457

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 41/118 (34%), Positives = 68/118 (57%)
 Frame = +2

Query: 2   EEIIHLNPDNMNRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGR 181
           ++++H    N  R+    +  T  EV RAK+ L+  L+ SL+++ +  ++I RQL+  GR
Sbjct: 344 DDLVHFTLQNWARL----TVATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGR 399

Query: 182 RVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
           R+  +E+  +I  +    +  V +  I+DK   V+A G IEGLLDYN IR S +  R+
Sbjct: 400 RMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,300,208
Number of Sequences: 369166
Number of extensions: 614604
Number of successful extensions: 1882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)