Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J24
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase comp... 112 3e-25
sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase comp... 111 5e-25
sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase comp... 110 1e-24
sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase bet... 107 9e-24
sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase bet... 107 1e-23
sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta ... 100 1e-21
sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase bet... 80 2e-15
sp|Q00302|MPPB_BLAEM Mitochondrial processing peptidase bet... 79 3e-15
sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase bet... 77 1e-14
sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing pept... 73 2e-13
>sp|P31930|UQCR1_HUMAN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 112 bits (280), Expect = 3e-25
Identities = 50/104 (48%), Positives = 71/104 (68%)
Frame = +2
Query: 44 IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
+RLC++ TE EV R K+ L+N L++ L+ + C++I R L+ YGRR+PL E ++I V
Sbjct: 377 MRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV 436
Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
+A +R + + YIYD+CP VA YGPIE L DYN IR WLR+
Sbjct: 437 DASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480
>sp|Q9CZ13|UQCR1_MOUSE Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 111 bits (278), Expect = 5e-25
Identities = 49/104 (47%), Positives = 70/104 (67%)
Frame = +2
Query: 44 IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
+RLC++ TE EV R K+ L+N L++ L+ + C++I R L+ YGRR+PL E ++I V
Sbjct: 377 MRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEV 436
Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
+A +R + + Y YD+CP VA YGPIE L DYN IR WLR+
Sbjct: 437 DAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480
>sp|P31800|UQCR1_BOVIN Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial precursor
Length = 480
Score = 110 bits (274), Expect = 1e-24
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Frame = +2
Query: 14 HLNPDNM-----NRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYG 178
H++ D+M + +RLC++ TE EV R K+ L+N L++ L+ + C++I R L+ YG
Sbjct: 362 HMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYG 421
Query: 179 RRVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
RR+PL E ++I V+A +R V + Y YD+CP VA +GPIE L DYN IR WLR+
Sbjct: 422 RRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 107 bits (267), Expect = 9e-24
Identities = 49/106 (46%), Positives = 72/106 (67%)
Frame = +2
Query: 35 NRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQI 214
N RLC+++TE EV RAK+ LK ++ L+ S C++I RQ++ Y RR+P+ EL +I
Sbjct: 383 NEWKRLCTDVTESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARI 442
Query: 215 DSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
D+V+A+T+R V YI+DK P +AA GPIE L D+N I + W+R
Sbjct: 443 DAVDAETVRRVCTKYIHDKSPAIAALGPIERLPDFNQICSNMRWIR 488
>sp|O75439|MPPB_HUMAN Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 107 bits (266), Expect = 1e-23
Identities = 48/103 (46%), Positives = 72/103 (69%)
Frame = +2
Query: 44 IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
+RLC+++TE EV RA++ LK ++ L+ S C++I RQ++ Y RR+P+ EL +ID+V
Sbjct: 386 MRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAV 445
Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
NA+TIR V YIY++ P +AA GPI+ L D+ IR + WLR
Sbjct: 446 NAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488
>sp|Q03346|MPPB_RAT Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (P-52)
Length = 489
Score = 100 bits (248), Expect = 1e-21
Identities = 46/103 (44%), Positives = 68/103 (66%)
Frame = +2
Query: 44 IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
+RLC+ ++E EV RAK+ LK ++ L+ S C++I RQ++ Y RR+P+ EL +ID+V
Sbjct: 386 MRLCTAVSESEVARAKNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAV 445
Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLR 352
+A+ +R V YIY K P +AA GPIE L D+N I + W R
Sbjct: 446 DAEMVREVCTKYIYGKSPAIAALGPIERLPDFNQICSNMRWTR 488
>sp|P11913|MPPB_NEUCR Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (Ubiquinol-cytochrome-c reductase
complex core protein I)
Length = 476
Score = 79.7 bits (195), Expect = 2e-15
Identities = 40/110 (36%), Positives = 67/110 (60%)
Frame = +2
Query: 2 EEIIHLNPDNMNRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGR 181
++++H + + RLCSN++E EV RAK+ LK ++ SL+ + + ++I RQ++ GR
Sbjct: 362 DDLVHFS---LREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGR 418
Query: 182 RVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIR 331
R+ E+ ID+V+A + N I+D+ ++A G IEGL DY IR
Sbjct: 419 RMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDYARIR 468
>sp|Q00302|MPPB_BLAEM Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP) (BeMPP1)
Length = 465
Score = 79.3 bits (194), Expect = 3e-15
Identities = 40/104 (38%), Positives = 62/104 (59%)
Frame = +2
Query: 44 IRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSV 223
+RL + +E EV AK LK L+ +L+ + +EI RQ++ YGRR+ E+ +D+V
Sbjct: 362 MRLATAPSEGEVAIAKQQLKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAV 421
Query: 224 NADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
+ ++ V N +IYD+ + A GP+E L DYN IR + LRY
Sbjct: 422 TVEDVKRVANEFIYDRDLAIVAVGPVECLPDYNRIRSAMNLLRY 465
>sp|Q9Y8B5|MPPB_LENED Mitochondrial processing peptidase beta subunit, mitochondrial
precursor (Beta-MPP)
Length = 466
Score = 77.0 bits (188), Expect = 1e-14
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = +2
Query: 65 TEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGRRVPLEELFNQIDSVNADTIRT 244
TE EV RAKS LK L+ SL+ + + ++I RQ++ G+R+ ++ N +D+V+ D I+
Sbjct: 370 TEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKR 429
Query: 245 VVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
V Y++DK +AA+G I+GL DY IR + + Y
Sbjct: 430 VAQKYLWDKDFALAAFGNIDGLKDYGRIRNDMSSMLY 466
>sp|Q9P7X1|MPPB_SCHPO Probable mitochondrial processing peptidase beta subunit,
mitochondrial precursor (Beta-MPP) (PEP)
Length = 457
Score = 72.8 bits (177), Expect = 2e-13
Identities = 41/118 (34%), Positives = 68/118 (57%)
Frame = +2
Query: 2 EEIIHLNPDNMNRMIRLCSNITEFEVNRAKSFLKNKLITSLNNSNSTCDEIARQLIVYGR 181
++++H N R+ + T EV RAK+ L+ L+ SL+++ + ++I RQL+ GR
Sbjct: 344 DDLVHFTLQNWARL----TVATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGR 399
Query: 182 RVPLEELFNQIDSVNADTIRTVVNSYIYDKCPVVAAYGPIEGLLDYNNIRRSTTWLRY 355
R+ +E+ +I + + V + I+DK V+A G IEGLLDYN IR S + R+
Sbjct: 400 RMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,300,208
Number of Sequences: 369166
Number of extensions: 614604
Number of successful extensions: 1882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)