Planaria EST Database


DrC_02020

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02020
         (567 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14642|TBA_PLAFK  Tubulin alpha chain                          150   3e-36
sp|P12543|TBA_PLAYO  Tubulin alpha chain                          150   3e-36
sp|P50258|TBAD_PHYPO  Tubulin alpha-1A chain                      150   3e-36
sp|P41351|TBA_TETTH  Tubulin alpha chain                          149   5e-36
sp|Q8WQ47|TBA_LEPDS  Tubulin alpha chain (Allergen Lep d ?)       149   6e-36
sp|P36220|TBA_TORMA  Tubulin alpha chain (Alpha T6)               148   1e-35
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       147   1e-35
sp|P09645|TBA8_CHICK  Tubulin alpha-8 chain                       147   1e-35
sp|Q94572|TBA3_HOMAM  Tubulin alpha-3 chain (Alpha-III tubulin)   147   1e-35
sp|P11139|TBA1_ARATH  Tubulin alpha-1 chain                       147   2e-35
>sp|P14642|TBA_PLAFK Tubulin alpha chain
          Length = 453

 Score =  150 bits (378), Expect = 3e-36
 Identities = 70/148 (47%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           + + K   E L+++ +T   F+  N   KC+P +G+YMAC ++YRG +   +DV      
Sbjct: 276 VSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNAAVAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK GIN QPPT V    L KV R+VC+++NST I++V   + QK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P12543|TBA_PLAYO Tubulin alpha chain
          Length = 453

 Score =  150 bits (378), Expect = 3e-36
 Identities = 70/148 (47%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           + + K   E L+++ +T   F+  N   KC+P +G+YMAC ++YRG +   +DV      
Sbjct: 276 VSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNAAVAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK GIN QPPT V    L KV R+VC+++NST I++V   + QK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P50258|TBAD_PHYPO Tubulin alpha-1A chain
          Length = 450

 Score =  150 bits (378), Expect = 3e-36
 Identities = 72/148 (48%), Positives = 96/148 (64%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L +  +T  VF+  N   KC+P +G+YMAC ++YRG +   +DV      
Sbjct: 276 ISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNASVAV 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK GIN QPPT V    L KV+R+VC+L+N+T I++V   I  K
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P41351|TBA_TETTH Tubulin alpha chain
          Length = 449

 Score =  149 bits (376), Expect = 5e-36
 Identities = 70/148 (47%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L++  +T   F+  N   KC+P +G+YMAC+++YRG +   +DV      
Sbjct: 276 ISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRG-DVVPKDVNASIAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV R+VC+++NST I++V   +  K
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
          Length = 450

 Score =  149 bits (375), Expect = 6e-36
 Identities = 72/148 (48%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I S K   E L ++ +T   F+  N  VKC+P +G+YMAC +LYRG +   +DV      
Sbjct: 276 ISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAA 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV+R+VC+L+N+T I++    +  K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
          Length = 451

 Score =  148 bits (373), Expect = 1e-35
 Identities = 71/148 (47%), Positives = 98/148 (66%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L+++ +T   F+  N  VKC+P +G+YMAC +LYRG +   +DV      
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV+R+VC+L+N+T I++    +  K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  147 bits (372), Expect = 1e-35
 Identities = 71/148 (47%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L ++ +T   F+  N  VKC+P +G+YMAC +LYRG +   +DV      
Sbjct: 276 ISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV+R+VC+L+N+T I++    +  K
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
          Length = 324

 Score =  147 bits (372), Expect = 1e-35
 Identities = 71/148 (47%), Positives = 98/148 (66%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L+++ +T   F+  N  VKC+P +G+YMAC +LYRG +   +DV      
Sbjct: 151 ISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRG-DVVPKDVNAAIAA 209

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV+R+VC+L+N+T I++    +  K
Sbjct: 210 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 269

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 270 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 297
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
          Length = 451

 Score =  147 bits (372), Expect = 1e-35
 Identities = 71/148 (47%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I + K   E L+++ +T   F+  N  VKC+P +G+YMAC +LYRG +   +DV      
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK+GIN QPPT V    L KV R+VC+L+N+T I++    +  K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFTEAR 422
>sp|P11139|TBA1_ARATH Tubulin alpha-1 chain
          Length = 450

 Score =  147 bits (371), Expect = 2e-35
 Identities = 69/148 (46%), Positives = 97/148 (65%)
 Frame = +3

Query: 3   IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
           I S+K   E  ++  +T  VF+  N   KC+P +G+YMAC ++YRG +   +DV      
Sbjct: 276 ISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRG-DVVPKDVNTAVAA 334

Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
                 I+FVDWCPTGFK GIN QPP+ V    L KV+R+VC+++N+T +++V   I  K
Sbjct: 335 IKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHK 394

Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
           FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAR 422
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,087,126
Number of Sequences: 369166
Number of extensions: 966232
Number of successful extensions: 2999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2597
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)