Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J14
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14642|TBA_PLAFK Tubulin alpha chain 150 3e-36
sp|P12543|TBA_PLAYO Tubulin alpha chain 150 3e-36
sp|P50258|TBAD_PHYPO Tubulin alpha-1A chain 150 3e-36
sp|P41351|TBA_TETTH Tubulin alpha chain 149 5e-36
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 149 6e-36
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 148 1e-35
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 147 1e-35
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 147 1e-35
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 147 1e-35
sp|P11139|TBA1_ARATH Tubulin alpha-1 chain 147 2e-35
>sp|P14642|TBA_PLAFK Tubulin alpha chain
Length = 453
Score = 150 bits (378), Expect = 3e-36
Identities = 70/148 (47%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
+ + K E L+++ +T F+ N KC+P +G+YMAC ++YRG + +DV
Sbjct: 276 VSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNAAVAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK GIN QPPT V L KV R+VC+++NST I++V + QK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P12543|TBA_PLAYO Tubulin alpha chain
Length = 453
Score = 150 bits (378), Expect = 3e-36
Identities = 70/148 (47%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
+ + K E L+++ +T F+ N KC+P +G+YMAC ++YRG + +DV
Sbjct: 276 VSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNAAVAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK GIN QPPT V L KV R+VC+++NST I++V + QK
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P50258|TBAD_PHYPO Tubulin alpha-1A chain
Length = 450
Score = 150 bits (378), Expect = 3e-36
Identities = 72/148 (48%), Positives = 96/148 (64%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L + +T VF+ N KC+P +G+YMAC ++YRG + +DV
Sbjct: 276 ISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRG-DVVPKDVNASVAV 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK GIN QPPT V L KV+R+VC+L+N+T I++V I K
Sbjct: 335 IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P41351|TBA_TETTH Tubulin alpha chain
Length = 449
Score = 149 bits (376), Expect = 5e-36
Identities = 70/148 (47%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L++ +T F+ N KC+P +G+YMAC+++YRG + +DV
Sbjct: 276 ISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRG-DVVPKDVNASIAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV R+VC+++NST I++V + K
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 149 bits (375), Expect = 6e-36
Identities = 72/148 (48%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I S K E L ++ +T F+ N VKC+P +G+YMAC +LYRG + +DV
Sbjct: 276 ISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAA 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV+R+VC+L+N+T I++ + K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 148 bits (373), Expect = 1e-35
Identities = 71/148 (47%), Positives = 98/148 (66%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L+++ +T F+ N VKC+P +G+YMAC +LYRG + +DV
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV+R+VC+L+N+T I++ + K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 147 bits (372), Expect = 1e-35
Identities = 71/148 (47%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L ++ +T F+ N VKC+P +G+YMAC +LYRG + +DV
Sbjct: 276 ISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV+R+VC+L+N+T I++ + K
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 147 bits (372), Expect = 1e-35
Identities = 71/148 (47%), Positives = 98/148 (66%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L+++ +T F+ N VKC+P +G+YMAC +LYRG + +DV
Sbjct: 151 ISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRG-DVVPKDVNAAIAA 209
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV+R+VC+L+N+T I++ + K
Sbjct: 210 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 269
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 270 FDLMYAKRAFVHWYVGEGMEEGEFSEAR 297
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 147 bits (372), Expect = 1e-35
Identities = 71/148 (47%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I + K E L+++ +T F+ N VKC+P +G+YMAC +LYRG + +DV
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRG-DVVPKDVNAAIAT 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK+GIN QPPT V L KV R+VC+L+N+T I++ + K
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFTEAR 422
>sp|P11139|TBA1_ARATH Tubulin alpha-1 chain
Length = 450
Score = 147 bits (371), Expect = 2e-35
Identities = 69/148 (46%), Positives = 97/148 (65%)
Frame = +3
Query: 3 IPSSKRTAEPLNLNALTEEVFQKRNFNVKCNPEYGEYMACAILYRGKNCGVRDVXXXXXX 182
I S+K E ++ +T VF+ N KC+P +G+YMAC ++YRG + +DV
Sbjct: 276 ISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRG-DVVPKDVNTAVAA 334
Query: 183 XXXXXXIRFVDWCPTGFKIGINRQPPTYVQYSCLGKVKRSVCLLANSTCISQVLDYIIQK 362
I+FVDWCPTGFK GIN QPP+ V L KV+R+VC+++N+T +++V I K
Sbjct: 335 IKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHK 394
Query: 363 FDLLYRKKAYVHWFTGEGLEEAEFIEAR 446
FDL+Y K+A+VHW+ GEG+EE EF EAR
Sbjct: 395 FDLMYSKRAFVHWYVGEGMEEGEFSEAR 422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,087,126
Number of Sequences: 369166
Number of extensions: 966232
Number of successful extensions: 2999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2597
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)