Planaria EST Database


DrC_02016

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02016
         (918 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61701|ELAV4_MOUSE  ELAV-like protein 4 (Paraneoplastic e...   256   8e-68
sp|O09032|ELAV4_RAT  ELAV-like protein 4 (Paraneoplastic enc...   253   7e-67
sp|Q12926|ELAV2_HUMAN  ELAV-like protein 2 (Hu-antigen B) (H...   253   7e-67
sp|P26378|ELAV4_HUMAN  ELAV-like protein 4 (Paraneoplastic e...   253   7e-67
sp|Q60899|ELAV2_MOUSE  ELAV-like protein 2 (Hu-antigen B) (H...   252   9e-67
sp|Q60900|ELAV3_MOUSE  ELAV-like protein 3 (Hu-antigen C) (HuC)   242   9e-64
sp|Q14576|ELAV3_HUMAN  ELAV-like protein 3 (Hu-antigen C) (H...   242   1e-63
sp|Q15717|ELAV1_HUMAN  ELAV-like protein 1 (Hu-antigen R) (HuR)   233   6e-61
sp|P70372|ELAV1_MOUSE  ELAV-like protein 1 (Hu-antigen R) (H...   231   3e-60
sp|P16914|ELAV_DROME  Elav protein (Embryonic lethal abnorma...   208   2e-53
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
           (Hu-antigen D)
          Length = 385

 Score =  256 bits (653), Expect = 8e-68
 Identities = 141/224 (62%), Positives = 163/224 (72%), Gaps = 18/224 (8%)
 Frame = +1

Query: 232 VDWNGT-MCEGNIE-SVTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPP 357
           ++WNG  M    +E  V+  PTSN      S N NC           ++KTNLIVNYLP 
Sbjct: 1   MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQ 60

Query: 358 NMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNK 537
           NMTQEE R+LF SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ K
Sbjct: 61  NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 120

Query: 538 TIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGV 717
           TIKVS ARPSS SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D  TG+SRGV
Sbjct: 121 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 180

Query: 718 AFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
            FIRFD+R EAE AIK LNG  P  ++EPITVKFAN+PS  + Q
Sbjct: 181 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
           NL V+ LP  MTQ+E+  LF+  G + + +++ D+ TG S G  F++F +  +AE+AIK 
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197

Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
           LNG +    T  +++   ++ S K +   +  L
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 230

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 40/73 (54%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P+  +  +  LF   G V + K++RD  T +  G+ FV     ++A  AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query: 514 NGLRLQNKTIKVS 552
           NG RL ++ ++VS
Sbjct: 364 NGYRLGDRVLQVS 376
>sp|O09032|ELAV4_RAT ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
           (Hu-antigen D)
          Length = 373

 Score =  253 bits (645), Expect = 7e-67
 Identities = 136/208 (65%), Positives = 155/208 (74%), Gaps = 16/208 (7%)
 Frame = +1

Query: 274 VTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPPNMTQEEVRALFTSIGE 405
           V+  PTSN      S N NC           ++KTNLIVNYLP NMTQEE R+LF SIGE
Sbjct: 5   VSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64

Query: 406 VESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKG 585
           +ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS SI+ 
Sbjct: 65  IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124

Query: 586 ANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAELAIK 765
           ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D  TG+SRGV FIRFD+R EAE AIK
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query: 766 KLNGHMPDNSSEPITVKFANSPSTTTRQ 849
            LNG  P  ++EPITVKFAN+PS  + Q
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQ 212

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
           NL V+ LP  MTQ+E+  LF+  G + + +++ D+ TG S G  F++F +  +AE+AIK 
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185

Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
           LNG +    T  +++   ++ S K +   +  L
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 218

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 40/73 (54%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P+  +  +  LF   G V + K++RD  T +  G+ FV     ++A  AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351

Query: 514 NGLRLQNKTIKVS 552
           NG RL ++ ++VS
Sbjct: 352 NGYRLGDRVLQVS 364
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like neuronal
           protein 1) (Nervous system-specific RNA binding protein
           Hel-N1)
          Length = 359

 Score =  253 bits (645), Expect = 7e-67
 Identities = 134/213 (62%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
 Frame = +1

Query: 241 NGTMCEGNIESVTPSPTSNDSLNMNC----------ENKTNLIVNYLPPNMTQEEVRALF 390
           NG  C       T       ++N NC          ++KTNLIVNYLP NMTQEE+++LF
Sbjct: 7   NGPTCNNTANGPT-------TINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59

Query: 391 TSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSS 570
            SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS
Sbjct: 60  GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119

Query: 571 ESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEA 750
            SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D  TG+SRGV FIRFD+R EA
Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179

Query: 751 ELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
           E AIK LNG  P  ++EPITVKFAN+PS  T Q
Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 41/73 (56%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P+  +  +  +F   G V + K++RD  T +  G+ FV     ++A  AI++L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSL 337

Query: 514 NGLRLQNKTIKVS 552
           NG RL ++ ++VS
Sbjct: 338 NGYRLGDRVLQVS 350
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
           (Hu-antigen D)
          Length = 380

 Score =  253 bits (645), Expect = 7e-67
 Identities = 136/208 (65%), Positives = 155/208 (74%), Gaps = 16/208 (7%)
 Frame = +1

Query: 274 VTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPPNMTQEEVRALFTSIGE 405
           V+  PTSN      S N NC           ++KTNLIVNYLP NMTQEE R+LF SIGE
Sbjct: 12  VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71

Query: 406 VESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKG 585
           +ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS SI+ 
Sbjct: 72  IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131

Query: 586 ANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAELAIK 765
           ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D  TG+SRGV FIRFD+R EAE AIK
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query: 766 KLNGHMPDNSSEPITVKFANSPSTTTRQ 849
            LNG  P  ++EPITVKFAN+PS  + Q
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQ 219

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
           NL V+ LP  MTQ+E+  LF+  G + + +++ D+ TG S G  F++F +  +AE+AIK 
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192

Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
           LNG +    T  +++   ++ S K +   +  L
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 225

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 40/73 (54%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P+  +  +  LF   G V + K++RD  T +  G+ FV     ++A  AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 514 NGLRLQNKTIKVS 552
           NG RL ++ ++VS
Sbjct: 359 NGYRLGDRVLQVS 371
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like neuronal
           protein 1) (Nervous system-specific RNA binding protein
           Mel-N1)
          Length = 360

 Score =  252 bits (644), Expect = 9e-67
 Identities = 134/213 (62%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
 Frame = +1

Query: 241 NGTMCEGNIESVTPSPTSNDSLNMNC----------ENKTNLIVNYLPPNMTQEEVRALF 390
           NG  C       T       ++N NC          ++KTNLIVNYLP NMTQEE+++LF
Sbjct: 7   NGPTCNNTANGPT-------TVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59

Query: 391 TSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSS 570
            SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS
Sbjct: 60  GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119

Query: 571 ESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEA 750
            SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D  TG+SRGV FIRFD+R EA
Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179

Query: 751 ELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
           E AIK LNG  P  ++EPITVKFAN+PS  T Q
Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212

 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 23/73 (31%), Positives = 40/73 (54%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P+  +  +  +F   G V + K++RD  T +  G+ FV     ++A  AI +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 514 NGLRLQNKTIKVS 552
           NG RL ++ ++VS
Sbjct: 339 NGYRLGDRVLQVS 351
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 (Hu-antigen C) (HuC)
          Length = 367

 Score =  242 bits (618), Expect = 9e-64
 Identities = 122/177 (68%), Positives = 145/177 (81%)
 Frame = +1

Query: 319 ENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEK 498
           ++KTNLIVNYLP NMTQ+E ++LF SIG++ESCKLVRDK TG+SLGY FV +  PNDA+K
Sbjct: 36  DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95

Query: 499 AIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITAR 678
           AI TLNGL+LQ KTIKVS ARPSS SI+ ANLY+ GLPK M+Q E+E+ FSQ G+IIT+R
Sbjct: 96  AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155

Query: 679 ILYDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
           IL D  TG+SRGV FIRFD+R EAE AIK LNG  P  ++EPITVKFAN+PS  T Q
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 39/73 (53%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P   +  +  LF   G V + K++RD TT +  G+ FV     ++A  AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 514 NGLRLQNKTIKVS 552
           NG RL  + ++VS
Sbjct: 346 NGYRLGERVLQVS 358
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic cerebellar
           degeneration-associated antigen) (Paraneoplastic limbic
           encephalitis antigen 21)
          Length = 367

 Score =  242 bits (617), Expect = 1e-63
 Identities = 122/177 (68%), Positives = 145/177 (81%)
 Frame = +1

Query: 319 ENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEK 498
           ++KTNLIVNYLP NMTQ+E ++LF SIG++ESCKLVRDK TG+SLGY FV +  PNDA+K
Sbjct: 36  DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95

Query: 499 AIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITAR 678
           AI TLNGL+LQ KTIKVS ARPSS SI+ ANLY+ GLPK M+Q E+E+ FSQ G+IIT+R
Sbjct: 96  AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155

Query: 679 ILYDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
           IL D  TG+SRGV FIRFD+R EAE AIK LNG  P  ++EPITVKFAN+PS  T Q
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 39/73 (53%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + V  L P   +  +  LF   G V + K++RD TT +  G+ FV     ++A  AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 514 NGLRLQNKTIKVS 552
           NG RL  + ++VS
Sbjct: 346 NGYRLGERVLQVS 358
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 (Hu-antigen R) (HuR)
          Length = 326

 Score =  233 bits (594), Expect = 6e-61
 Identities = 117/170 (68%), Positives = 138/170 (81%)
 Frame = +1

Query: 325 KTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAI 504
           +TNLIVNYLP NMTQ+E+R+LF+SIGEVES KL+RDK  G SLGY FV ++   DAE+AI
Sbjct: 19  RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query: 505 KTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARIL 684
            TLNGLRLQ+KTIKVS ARPSSE IK ANLYI GLP+ MTQ ++E+ FS+ G+II +R+L
Sbjct: 79  NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138

Query: 685 YDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPS 834
            D  TGLSRGVAFIRFD+R EAE AI   NGH P  SSEPITVKFA +P+
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN 188

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 33/101 (32%), Positives = 48/101 (47%)
 Frame = +1

Query: 553 LARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRF 732
           +A      I   NL +  LP+ MTQ EL   FS  G++ +A+++ D   G S G  F+ +
Sbjct: 9   MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68

Query: 733 DQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQDN 855
               +AE AI  LNG      S+ I V +A   S   +  N
Sbjct: 69  VTAKDAERAINTLNGLR--LQSKTIKVSYARPSSEVIKDAN 107

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +1

Query: 385 LFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVS 552
           +F   G V + K++RD  T +  G+ FV      +A  AI +LNG RL +K ++VS
Sbjct: 263 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like generic
           protein) (MelG)
          Length = 326

 Score =  231 bits (588), Expect = 3e-60
 Identities = 117/170 (68%), Positives = 137/170 (80%)
 Frame = +1

Query: 325 KTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAI 504
           +TNLIVNYLP NMTQEE+R+LF+SIGEVES KL+RDK  G SLGY FV ++   DAE+AI
Sbjct: 19  RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78

Query: 505 KTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARIL 684
            TLNGLRLQ+KTIKVS ARPSSE IK ANLYI GLP+ MTQ ++E+ FS+ G+II +R+L
Sbjct: 79  STLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138

Query: 685 YDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPS 834
            D  TGLSRGVAFIRFD+R EAE AI    GH P  SSEPITVKFA +P+
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPN 188

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 33/101 (32%), Positives = 48/101 (47%)
 Frame = +1

Query: 553 LARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRF 732
           +A      I   NL +  LP+ MTQ EL   FS  G++ +A+++ D   G S G  F+ +
Sbjct: 9   MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68

Query: 733 DQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQDN 855
               +AE AI  LNG      S+ I V +A   S   +  N
Sbjct: 69  VTAKDAERAISTLNGLR--LQSKTIKVSYARPSSEVIKDAN 107

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 385 LFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVS 552
           +F   G V + K++RD  T +  G+ FV      ++  AI +LNG RL +K ++VS
Sbjct: 263 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318
>sp|P16914|ELAV_DROME Elav protein (Embryonic lethal abnormal visual protein)
          Length = 483

 Score =  208 bits (529), Expect = 2e-53
 Identities = 109/199 (54%), Positives = 143/199 (71%), Gaps = 14/199 (7%)
 Frame = +1

Query: 292 SNDSLNMNCENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTT---------- 441
           S +  N + E +TNLIVNYLP  MT++E+R+LF+S+GE+ES KL+RDK+           
Sbjct: 137 SQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQA 196

Query: 442 ---GESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLP 612
              G+SLGY FV ++RP DAE+A+  LNGLRLQNKTIKVS ARPSS++IKGANLY+ GLP
Sbjct: 197 PSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLP 256

Query: 613 KKMTQVELEEQFSQCGKIITARILYD-NKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPD 789
           K MTQ ELE  F+  G IIT+RIL +      ++GV FIRFD+R EA  AI  LNG  P 
Sbjct: 257 KTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPS 316

Query: 790 NSSEPITVKFANSPSTTTR 846
           + ++PI VKF+N+P +T++
Sbjct: 317 SCTDPIVVKFSNTPGSTSK 335

 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = +1

Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
           + +  L P   +  +  LF   G V+S K+V+D TT +  GY FV     ++A  AI+ L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query: 514 NGLRLQNKTIKVS 552
           NG  + N+ ++VS
Sbjct: 464 NGYTMGNRVLQVS 476
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.311    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,551,800
Number of Sequences: 369166
Number of extensions: 1548184
Number of successful extensions: 4176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3990
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)