Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J03
(918 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 (Paraneoplastic e... 256 8e-68
sp|O09032|ELAV4_RAT ELAV-like protein 4 (Paraneoplastic enc... 253 7e-67
sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 (Hu-antigen B) (H... 253 7e-67
sp|P26378|ELAV4_HUMAN ELAV-like protein 4 (Paraneoplastic e... 253 7e-67
sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 (Hu-antigen B) (H... 252 9e-67
sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 (Hu-antigen C) (HuC) 242 9e-64
sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 (Hu-antigen C) (H... 242 1e-63
sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 (Hu-antigen R) (HuR) 233 6e-61
sp|P70372|ELAV1_MOUSE ELAV-like protein 1 (Hu-antigen R) (H... 231 3e-60
sp|P16914|ELAV_DROME Elav protein (Embryonic lethal abnorma... 208 2e-53
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
(Hu-antigen D)
Length = 385
Score = 256 bits (653), Expect = 8e-68
Identities = 141/224 (62%), Positives = 163/224 (72%), Gaps = 18/224 (8%)
Frame = +1
Query: 232 VDWNGT-MCEGNIE-SVTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPP 357
++WNG M +E V+ PTSN S N NC ++KTNLIVNYLP
Sbjct: 1 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQ 60
Query: 358 NMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNK 537
NMTQEE R+LF SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ K
Sbjct: 61 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 120
Query: 538 TIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGV 717
TIKVS ARPSS SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D TG+SRGV
Sbjct: 121 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 180
Query: 718 AFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
FIRFD+R EAE AIK LNG P ++EPITVKFAN+PS + Q
Sbjct: 181 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 57.8 bits (138), Expect = 4e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Frame = +1
Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
NL V+ LP MTQ+E+ LF+ G + + +++ D+ TG S G F++F + +AE+AIK
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
LNG + T +++ ++ S K + + L
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 230
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P+ + + LF G V + K++RD T + G+ FV ++A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 514 NGLRLQNKTIKVS 552
NG RL ++ ++VS
Sbjct: 364 NGYRLGDRVLQVS 376
>sp|O09032|ELAV4_RAT ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
(Hu-antigen D)
Length = 373
Score = 253 bits (645), Expect = 7e-67
Identities = 136/208 (65%), Positives = 155/208 (74%), Gaps = 16/208 (7%)
Frame = +1
Query: 274 VTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPPNMTQEEVRALFTSIGE 405
V+ PTSN S N NC ++KTNLIVNYLP NMTQEE R+LF SIGE
Sbjct: 5 VSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 64
Query: 406 VESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKG 585
+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS SI+
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Query: 586 ANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAELAIK 765
ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D TG+SRGV FIRFD+R EAE AIK
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 766 KLNGHMPDNSSEPITVKFANSPSTTTRQ 849
LNG P ++EPITVKFAN+PS + Q
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 57.8 bits (138), Expect = 4e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Frame = +1
Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
NL V+ LP MTQ+E+ LF+ G + + +++ D+ TG S G F++F + +AE+AIK
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
LNG + T +++ ++ S K + + L
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 218
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P+ + + LF G V + K++RD T + G+ FV ++A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 514 NGLRLQNKTIKVS 552
NG RL ++ ++VS
Sbjct: 352 NGYRLGDRVLQVS 364
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like neuronal
protein 1) (Nervous system-specific RNA binding protein
Hel-N1)
Length = 359
Score = 253 bits (645), Expect = 7e-67
Identities = 134/213 (62%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
Frame = +1
Query: 241 NGTMCEGNIESVTPSPTSNDSLNMNC----------ENKTNLIVNYLPPNMTQEEVRALF 390
NG C T ++N NC ++KTNLIVNYLP NMTQEE+++LF
Sbjct: 7 NGPTCNNTANGPT-------TINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 391 TSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSS 570
SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Query: 571 ESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEA 750
SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D TG+SRGV FIRFD+R EA
Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
Query: 751 ELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
E AIK LNG P ++EPITVKFAN+PS T Q
Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 45.4 bits (106), Expect = 2e-04
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P+ + + +F G V + K++RD T + G+ FV ++A AI++L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSL 337
Query: 514 NGLRLQNKTIKVS 552
NG RL ++ ++VS
Sbjct: 338 NGYRLGDRVLQVS 350
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD)
(Hu-antigen D)
Length = 380
Score = 253 bits (645), Expect = 7e-67
Identities = 136/208 (65%), Positives = 155/208 (74%), Gaps = 16/208 (7%)
Frame = +1
Query: 274 VTPSPTSN-----DSLNMNC-----------ENKTNLIVNYLPPNMTQEEVRALFTSIGE 405
V+ PTSN S N NC ++KTNLIVNYLP NMTQEE R+LF SIGE
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 406 VESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKG 585
+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS SI+
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131
Query: 586 ANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEAELAIK 765
ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D TG+SRGV FIRFD+R EAE AIK
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 766 KLNGHMPDNSSEPITVKFANSPSTTTRQ 849
LNG P ++EPITVKFAN+PS + Q
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 57.8 bits (138), Expect = 4e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Frame = +1
Query: 331 NLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKT 510
NL V+ LP MTQ+E+ LF+ G + + +++ D+ TG S G F++F + +AE+AIK
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 511 LNGLRLQNKTIKVSLARPSSESIKGANLYICGL 609
LNG + T +++ ++ S K + + L
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSSQALLSQL 225
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P+ + + LF G V + K++RD T + G+ FV ++A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 514 NGLRLQNKTIKVS 552
NG RL ++ ++VS
Sbjct: 359 NGYRLGDRVLQVS 371
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like neuronal
protein 1) (Nervous system-specific RNA binding protein
Mel-N1)
Length = 360
Score = 252 bits (644), Expect = 9e-67
Identities = 134/213 (62%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
Frame = +1
Query: 241 NGTMCEGNIESVTPSPTSNDSLNMNC----------ENKTNLIVNYLPPNMTQEEVRALF 390
NG C T ++N NC ++KTNLIVNYLP NMTQEE+++LF
Sbjct: 7 NGPTCNNTANGPT-------TVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLF 59
Query: 391 TSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSS 570
SIGE+ESCKLVRDK TG+SLGY FV ++ P DAEKAI TLNGLRLQ KTIKVS ARPSS
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
Query: 571 ESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRFDQRCEA 750
SI+ ANLY+ GLPK MTQ ELE+ FSQ G+IIT+RIL D TG+SRGV FIRFD+R EA
Sbjct: 120 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 179
Query: 751 ELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
E AIK LNG P ++EPITVKFAN+PS T Q
Sbjct: 180 EEAIKGLNGQKPPGATEPITVKFANNPSQKTNQ 212
Score = 44.3 bits (103), Expect = 5e-04
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P+ + + +F G V + K++RD T + G+ FV ++A AI +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 514 NGLRLQNKTIKVS 552
NG RL ++ ++VS
Sbjct: 339 NGYRLGDRVLQVS 351
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 (Hu-antigen C) (HuC)
Length = 367
Score = 242 bits (618), Expect = 9e-64
Identities = 122/177 (68%), Positives = 145/177 (81%)
Frame = +1
Query: 319 ENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEK 498
++KTNLIVNYLP NMTQ+E ++LF SIG++ESCKLVRDK TG+SLGY FV + PNDA+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 499 AIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITAR 678
AI TLNGL+LQ KTIKVS ARPSS SI+ ANLY+ GLPK M+Q E+E+ FSQ G+IIT+R
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
Query: 679 ILYDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
IL D TG+SRGV FIRFD+R EAE AIK LNG P ++EPITVKFAN+PS T Q
Sbjct: 156 ILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P + + LF G V + K++RD TT + G+ FV ++A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 514 NGLRLQNKTIKVS 552
NG RL + ++VS
Sbjct: 346 NGYRLGERVLQVS 358
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic cerebellar
degeneration-associated antigen) (Paraneoplastic limbic
encephalitis antigen 21)
Length = 367
Score = 242 bits (617), Expect = 1e-63
Identities = 122/177 (68%), Positives = 145/177 (81%)
Frame = +1
Query: 319 ENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEK 498
++KTNLIVNYLP NMTQ+E ++LF SIG++ESCKLVRDK TG+SLGY FV + PNDA+K
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 499 AIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITAR 678
AI TLNGL+LQ KTIKVS ARPSS SI+ ANLY+ GLPK M+Q E+E+ FSQ G+IIT+R
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
Query: 679 ILYDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQ 849
IL D TG+SRGV FIRFD+R EAE AIK LNG P ++EPITVKFAN+PS T Q
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ V L P + + LF G V + K++RD TT + G+ FV ++A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 514 NGLRLQNKTIKVS 552
NG RL + ++VS
Sbjct: 346 NGYRLGERVLQVS 358
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 (Hu-antigen R) (HuR)
Length = 326
Score = 233 bits (594), Expect = 6e-61
Identities = 117/170 (68%), Positives = 138/170 (81%)
Frame = +1
Query: 325 KTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAI 504
+TNLIVNYLP NMTQ+E+R+LF+SIGEVES KL+RDK G SLGY FV ++ DAE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 505 KTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARIL 684
TLNGLRLQ+KTIKVS ARPSSE IK ANLYI GLP+ MTQ ++E+ FS+ G+II +R+L
Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 685 YDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPS 834
D TGLSRGVAFIRFD+R EAE AI NGH P SSEPITVKFA +P+
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN 188
Score = 49.7 bits (117), Expect = 1e-05
Identities = 33/101 (32%), Positives = 48/101 (47%)
Frame = +1
Query: 553 LARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRF 732
+A I NL + LP+ MTQ EL FS G++ +A+++ D G S G F+ +
Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 733 DQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQDN 855
+AE AI LNG S+ I V +A S + N
Sbjct: 69 VTAKDAERAINTLNGLR--LQSKTIKVSYARPSSEVIKDAN 107
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 385 LFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVS 552
+F G V + K++RD T + G+ FV +A AI +LNG RL +K ++VS
Sbjct: 263 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like generic
protein) (MelG)
Length = 326
Score = 231 bits (588), Expect = 3e-60
Identities = 117/170 (68%), Positives = 137/170 (80%)
Frame = +1
Query: 325 KTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAI 504
+TNLIVNYLP NMTQEE+R+LF+SIGEVES KL+RDK G SLGY FV ++ DAE+AI
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 505 KTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARIL 684
TLNGLRLQ+KTIKVS ARPSSE IK ANLYI GLP+ MTQ ++E+ FS+ G+II +R+L
Sbjct: 79 STLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 685 YDNKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPDNSSEPITVKFANSPS 834
D TGLSRGVAFIRFD+R EAE AI GH P SSEPITVKFA +P+
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPN 188
Score = 50.1 bits (118), Expect = 9e-06
Identities = 33/101 (32%), Positives = 48/101 (47%)
Frame = +1
Query: 553 LARPSSESIKGANLYICGLPKKMTQVELEEQFSQCGKIITARILYDNKTGLSRGVAFIRF 732
+A I NL + LP+ MTQ EL FS G++ +A+++ D G S G F+ +
Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 733 DQRCEAELAIKKLNGHMPDNSSEPITVKFANSPSTTTRQDN 855
+AE AI LNG S+ I V +A S + N
Sbjct: 69 VTAKDAERAISTLNGLR--LQSKTIKVSYARPSSEVIKDAN 107
Score = 40.8 bits (94), Expect = 0.005
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 385 LFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVS 552
+F G V + K++RD T + G+ FV ++ AI +LNG RL +K ++VS
Sbjct: 263 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318
>sp|P16914|ELAV_DROME Elav protein (Embryonic lethal abnormal visual protein)
Length = 483
Score = 208 bits (529), Expect = 2e-53
Identities = 109/199 (54%), Positives = 143/199 (71%), Gaps = 14/199 (7%)
Frame = +1
Query: 292 SNDSLNMNCENKTNLIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTT---------- 441
S + N + E +TNLIVNYLP MT++E+R+LF+S+GE+ES KL+RDK+
Sbjct: 137 SQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQA 196
Query: 442 ---GESLGYAFVKFLRPNDAEKAIKTLNGLRLQNKTIKVSLARPSSESIKGANLYICGLP 612
G+SLGY FV ++RP DAE+A+ LNGLRLQNKTIKVS ARPSS++IKGANLY+ GLP
Sbjct: 197 PSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLP 256
Query: 613 KKMTQVELEEQFSQCGKIITARILYD-NKTGLSRGVAFIRFDQRCEAELAIKKLNGHMPD 789
K MTQ ELE F+ G IIT+RIL + ++GV FIRFD+R EA AI LNG P
Sbjct: 257 KTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPS 316
Query: 790 NSSEPITVKFANSPSTTTR 846
+ ++PI VKF+N+P +T++
Sbjct: 317 SCTDPIVVKFSNTPGSTSK 335
Score = 51.2 bits (121), Expect = 4e-06
Identities = 25/73 (34%), Positives = 40/73 (54%)
Frame = +1
Query: 334 LIVNYLPPNMTQEEVRALFTSIGEVESCKLVRDKTTGESLGYAFVKFLRPNDAEKAIKTL 513
+ + L P + + LF G V+S K+V+D TT + GY FV ++A AI+ L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 514 NGLRLQNKTIKVS 552
NG + N+ ++VS
Sbjct: 464 NGYTMGNRVLQVS 476
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.311 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,551,800
Number of Sequences: 369166
Number of extensions: 1548184
Number of successful extensions: 4176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3990
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)