Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02015
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10165|YAUA_SCHPO Hypothetical protein C26A3.10 in chrom... 31 3.9
sp|Q85C71|RPOC2_ANTFO DNA-directed RNA polymerase beta'' ch... 30 6.6
>sp|Q10165|YAUA_SCHPO Hypothetical protein C26A3.10 in chromosome I
Length = 923
Score = 31.2 bits (69), Expect = 3.9
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 602 YGSTKSGNQHKIFNMICWKKSGLIIENNDLCESDILDFEIESNIANVKMK 751
+G+T+ G + + W K +++EN L E ++SN++++ +K
Sbjct: 536 FGATELGTDLAMVSKAAWHKHWIVVENGSLWEYANWKDSVKSNVSSISLK 585
>sp|Q85C71|RPOC2_ANTFO DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1445
Score = 30.4 bits (67), Expect = 6.6
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 623 NQHKIFNMICWKKSGLIIENNDLCESDILDFEIESNIANVKMK 751
+Q+KI N+I +S L+I+NN ES L E+ + ++ K K
Sbjct: 394 SQNKIHNLIIPSQSLLLIQNNQYVESKQLIAEVHAKVSPFKEK 436
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,891,903
Number of Sequences: 369166
Number of extensions: 1743266
Number of successful extensions: 3365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)