Planaria EST Database


DrC_02015

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02015
         (860 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10165|YAUA_SCHPO  Hypothetical protein C26A3.10 in chrom...    31   3.9  
sp|Q85C71|RPOC2_ANTFO  DNA-directed RNA polymerase beta'' ch...    30   6.6  
>sp|Q10165|YAUA_SCHPO Hypothetical protein C26A3.10 in chromosome I
          Length = 923

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 602 YGSTKSGNQHKIFNMICWKKSGLIIENNDLCESDILDFEIESNIANVKMK 751
           +G+T+ G    + +   W K  +++EN  L E       ++SN++++ +K
Sbjct: 536 FGATELGTDLAMVSKAAWHKHWIVVENGSLWEYANWKDSVKSNVSSISLK 585
>sp|Q85C71|RPOC2_ANTFO DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
           polymerase beta'' subunit) (RNA polymerase beta''
           subunit)
          Length = 1445

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 623 NQHKIFNMICWKKSGLIIENNDLCESDILDFEIESNIANVKMK 751
           +Q+KI N+I   +S L+I+NN   ES  L  E+ + ++  K K
Sbjct: 394 SQNKIHNLIIPSQSLLLIQNNQYVESKQLIAEVHAKVSPFKEK 436
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,891,903
Number of Sequences: 369166
Number of extensions: 1743266
Number of successful extensions: 3365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)