Planaria EST Database


DrC_02014

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02014
         (375 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42036|RS143_ARATH  40S ribosomal protein S14-3                110   1e-24
sp|Q9CAX6|RS142_ARATH  40S ribosomal protein S14-2                109   2e-24
sp|Q9SIH0|RS141_ARATH  40S ribosomal protein S14-1                109   2e-24
sp|P19950|RS141_MAIZE  40S ribosomal protein S14 (Clone MCH1)     108   3e-24
sp|P19951|RS142_MAIZE  40S ribosomal protein S14 (Clone MCH2)     107   6e-24
sp|P13471|RS14_RAT  40S ribosomal protein S14                     107   1e-23
sp|P62264|RS14_MOUSE  40S ribosomal protein S14 >gi|50403752...   107   1e-23
sp|P48150|RS14_CAEEL  40S ribosomal protein S14                   107   1e-23
sp|O22584|RS14_LUPLU  40S ribosomal protein S14                   107   1e-23
sp|P27069|RS14_KLULA  40S ribosomal protein S14 (RP59)            106   2e-23
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
          Length = 150

 Score =  110 bits (274), Expect = 1e-24
 Identities = 55/79 (69%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T           
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 182 XXXSGMKIGRIEDVTPSTT 238
              SGMKIGRIEDVTP  T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
          Length = 150

 Score =  109 bits (272), Expect = 2e-24
 Identities = 55/79 (69%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T           
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 182 XXXSGMKIGRIEDVTPSTT 238
              SGMKIGRIEDVTP  T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
          Length = 150

 Score =  109 bits (272), Expect = 2e-24
 Identities = 55/79 (69%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T           
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117

Query: 182 XXXSGMKIGRIEDVTPSTT 238
              SGMKIGRIEDVTP  T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
          Length = 149

 Score =  108 bits (271), Expect = 3e-24
 Identities = 54/79 (68%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG K++T           
Sbjct: 57  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 116

Query: 182 XXXSGMKIGRIEDVTPSTT 238
              SGMKIGRIEDVTP  T
Sbjct: 117 LARSGMKIGRIEDVTPVPT 135

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTP+P D+TRRKGGRRG
Sbjct: 121 GMKIGRIEDVTPVPTDSTRRKGGRRG 146
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
          Length = 150

 Score =  107 bits (268), Expect = 6e-24
 Identities = 53/79 (67%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T           
Sbjct: 58  GMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 117

Query: 182 XXXSGMKIGRIEDVTPSTT 238
              SGMKIGRIEDVTP  T
Sbjct: 118 LARSGMKIGRIEDVTPVPT 136

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTP+P D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPVPTDSTRRKGGRRG 147
>sp|P13471|RS14_RAT 40S ribosomal protein S14
          Length = 151

 Score =  107 bits (266), Expect = 1e-23
 Identities = 52/76 (68%), Positives = 61/76 (80%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T           
Sbjct: 59  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 118

Query: 182 XXXSGMKIGRIEDVTP 229
              SGMKIGRIEDVTP
Sbjct: 119 LARSGMKIGRIEDVTP 134

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 123 GMKIGRIEDVTPIPSDSTRRKGGRRG 148
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
 sp|P62263|RS14_HUMAN 40S ribosomal protein S14
 sp|P62265|RS14_CRIGR 40S ribosomal protein S14
          Length = 151

 Score =  107 bits (266), Expect = 1e-23
 Identities = 52/76 (68%), Positives = 61/76 (80%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T           
Sbjct: 59  GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 118

Query: 182 XXXSGMKIGRIEDVTP 229
              SGMKIGRIEDVTP
Sbjct: 119 LARSGMKIGRIEDVTP 134

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 123 GMKIGRIEDVTPIPSDSTRRKGGRRG 148
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
          Length = 152

 Score =  107 bits (266), Expect = 1e-23
 Identities = 52/76 (68%), Positives = 61/76 (80%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T           
Sbjct: 60  GMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRA 119

Query: 182 XXXSGMKIGRIEDVTP 229
              +GMKIGRIEDVTP
Sbjct: 120 LARAGMKIGRIEDVTP 135

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D TRRKGGRRG
Sbjct: 124 GMKIGRIEDVTPIPSDCTRRKGGRRG 149
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
          Length = 150

 Score =  107 bits (266), Expect = 1e-23
 Identities = 53/76 (69%), Positives = 60/76 (78%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA RCK+LGITA+H+++RATGG K++T           
Sbjct: 58  GMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRA 117

Query: 182 XXXSGMKIGRIEDVTP 229
              SGMKIGRIEDVTP
Sbjct: 118 LARSGMKIGRIEDVTP 133

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           GMKIGRIEDVTPIP D+TRRK GRRG
Sbjct: 122 GMKIGRIEDVTPIPSDSTRRKSGRRG 147
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
          Length = 137

 Score =  106 bits (264), Expect = 2e-23
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +2

Query: 2   GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
           GMKVKADRDESSPYAAMLAAQDVA +CK++GITAVH+++RATGGT+S+T           
Sbjct: 45  GMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRA 104

Query: 182 XXXSGMKIGRIEDVTP 229
              SG++IGRIEDVTP
Sbjct: 105 LARSGLRIGRIEDVTP 120

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 20/26 (76%), Positives = 25/26 (96%)
 Frame = -3

Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
           G++IGRIEDVTP+P D+TR+KGGRRG
Sbjct: 109 GLRIGRIEDVTPVPSDSTRKKGGRRG 134
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,775,768
Number of Sequences: 369166
Number of extensions: 548054
Number of successful extensions: 1493
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)