Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_I23
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 110 1e-24
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 109 2e-24
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 109 2e-24
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 108 3e-24
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 107 6e-24
sp|P13471|RS14_RAT 40S ribosomal protein S14 107 1e-23
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 107 1e-23
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 107 1e-23
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 107 1e-23
sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59) 106 2e-23
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 110 bits (274), Expect = 1e-24
Identities = 55/79 (69%), Positives = 62/79 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 58 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRA 117
Query: 182 XXXSGMKIGRIEDVTPSTT 238
SGMKIGRIEDVTP T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136
Score = 53.1 bits (126), Expect = 2e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 109 bits (272), Expect = 2e-24
Identities = 55/79 (69%), Positives = 62/79 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 58 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117
Query: 182 XXXSGMKIGRIEDVTPSTT 238
SGMKIGRIEDVTP T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136
Score = 53.1 bits (126), Expect = 2e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 109 bits (272), Expect = 2e-24
Identities = 55/79 (69%), Positives = 62/79 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 58 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRA 117
Query: 182 XXXSGMKIGRIEDVTPSTT 238
SGMKIGRIEDVTP T
Sbjct: 118 LARSGMKIGRIEDVTPIPT 136
Score = 53.1 bits (126), Expect = 2e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPIPTDSTRRKGGRRG 147
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 108 bits (271), Expect = 3e-24
Identities = 54/79 (68%), Positives = 62/79 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG K++T
Sbjct: 57 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 116
Query: 182 XXXSGMKIGRIEDVTPSTT 238
SGMKIGRIEDVTP T
Sbjct: 117 LARSGMKIGRIEDVTPVPT 135
Score = 52.8 bits (125), Expect = 2e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTP+P D+TRRKGGRRG
Sbjct: 121 GMKIGRIEDVTPVPTDSTRRKGGRRG 146
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 107 bits (268), Expect = 6e-24
Identities = 53/79 (67%), Positives = 62/79 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T
Sbjct: 58 GMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 117
Query: 182 XXXSGMKIGRIEDVTPSTT 238
SGMKIGRIEDVTP T
Sbjct: 118 LARSGMKIGRIEDVTPVPT 136
Score = 52.8 bits (125), Expect = 2e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTP+P D+TRRKGGRRG
Sbjct: 122 GMKIGRIEDVTPVPTDSTRRKGGRRG 147
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 107 bits (266), Expect = 1e-23
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 59 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 118
Query: 182 XXXSGMKIGRIEDVTP 229
SGMKIGRIEDVTP
Sbjct: 119 LARSGMKIGRIEDVTP 134
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 123 GMKIGRIEDVTPIPSDSTRRKGGRRG 148
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 107 bits (266), Expect = 1e-23
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 59 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 118
Query: 182 XXXSGMKIGRIEDVTP 229
SGMKIGRIEDVTP
Sbjct: 119 LARSGMKIGRIEDVTP 134
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRKGGRRG
Sbjct: 123 GMKIGRIEDVTPIPSDSTRRKGGRRG 148
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 107 bits (266), Expect = 1e-23
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T
Sbjct: 60 GMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRA 119
Query: 182 XXXSGMKIGRIEDVTP 229
+GMKIGRIEDVTP
Sbjct: 120 LARAGMKIGRIEDVTP 135
Score = 52.8 bits (125), Expect = 2e-07
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D TRRKGGRRG
Sbjct: 124 GMKIGRIEDVTPIPSDCTRRKGGRRG 149
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 107 bits (266), Expect = 1e-23
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA RCK+LGITA+H+++RATGG K++T
Sbjct: 58 GMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRA 117
Query: 182 XXXSGMKIGRIEDVTP 229
SGMKIGRIEDVTP
Sbjct: 118 LARSGMKIGRIEDVTP 133
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
GMKIGRIEDVTPIP D+TRRK GRRG
Sbjct: 122 GMKIGRIEDVTPIPSDSTRRKSGRRG 147
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
Length = 137
Score = 106 bits (264), Expect = 2e-23
Identities = 51/76 (67%), Positives = 61/76 (80%)
Frame = +2
Query: 2 GMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXX 181
GMKVKADRDESSPYAAMLAAQDVA +CK++GITAVH+++RATGGT+S+T
Sbjct: 45 GMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRA 104
Query: 182 XXXSGMKIGRIEDVTP 229
SG++IGRIEDVTP
Sbjct: 105 LARSGLRIGRIEDVTP 120
Score = 49.7 bits (117), Expect = 2e-06
Identities = 20/26 (76%), Positives = 25/26 (96%)
Frame = -3
Query: 301 GMKIGRIEDVTPIPHDTTRRKGGRRG 224
G++IGRIEDVTP+P D+TR+KGGRRG
Sbjct: 109 GLRIGRIEDVTPVPSDSTRKKGGRRG 134
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,775,768
Number of Sequences: 369166
Number of extensions: 548054
Number of successful extensions: 1493
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)