Planaria EST Database


DrC_02010

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02010
         (876 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NQV7|PRDM9_HUMAN  PR-domain zinc finger protein 9             90   7e-18
sp|Q9NQW5|PRDM7_HUMAN  PR-domain zinc finger protein 7             90   9e-18
sp|Q9H4Q4|PRD12_HUMAN  PR-domain zinc finger protein 12            69   1e-11
sp|Q9NQX0|PRDM6_HUMAN  PR-domain zinc finger protein 6             67   5e-11
sp|Q9UKN5|PRDM4_HUMAN  PR-domain zinc finger protein 4             64   7e-10
sp|Q13029|PRDM2_HUMAN  PR-domain zinc finger protein 2 (Reti...    64   7e-10
sp|Q63755|PRDM2_RAT  PR-domain zinc finger protein 2 (Retino...    63   9e-10
sp|Q9GZV8|PRD14_HUMAN  PR-domain zinc finger protein 14            62   3e-09
sp|Q9HAZ2|PRD16_HUMAN  PR-domain zinc finger protein 16 (Tra...    60   8e-09
sp|Q9NQX1|PRDM5_HUMAN  PR-domain zinc finger protein 5             58   4e-08
>sp|Q9NQV7|PRDM9_HUMAN PR-domain zinc finger protein 9
          Length = 689

 Score = 90.1 bits (222), Expect = 7e-18
 Identities = 54/118 (45%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
 Frame = +2

Query: 524 TLTTGLLIKKSKIPNAGLGVWTRKS-IVIGTTFGPYLGEIGFVKREKDYQFFKKSLNGYA 700
           +L  GL I  S IP AGLGVW   S + +G  FGPY G I   +   +        NGY+
Sbjct: 35  SLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAAN--------NGYS 86

Query: 701 WVVRENLD---GVETY-LVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRAC 862
           W+VR       G   Y  VD  D   +NW+RYVNCAR+ EEQNLV+ QY+  IFYR C
Sbjct: 87  WLVRRACHFTKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTC 144
>sp|Q9NQW5|PRDM7_HUMAN PR-domain zinc finger protein 7
          Length = 407

 Score = 89.7 bits (221), Expect = 9e-18
 Identities = 50/114 (43%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
 Frame = +2

Query: 524 TLTTGLLIKKSKIPNAGLGVWTRKS-IVIGTTFGPYLGEIGFVKREKDYQFFKKSLNGYA 700
           +L  GL I  S IP AGLGVW   S + +G  FGPY G I   +   +        +GY+
Sbjct: 35  SLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAAN--------SGYS 86

Query: 701 WVVRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRAC 862
           W++ +  +  E   VD  D   +NW+RYVNCAR+ EEQNLV+ QY+  IFYR C
Sbjct: 87  WLITKGRNCYE--YVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTC 138
>sp|Q9H4Q4|PRD12_HUMAN PR-domain zinc finger protein 12
          Length = 367

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 40/111 (36%), Positives = 57/111 (51%)
 Frame = +2

Query: 527 LTTGLLIKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFKKSLNGYAWV 706
           L   ++I +S IP  GLG++++  I  GT  GP+ G    V   +     K   N   W 
Sbjct: 84  LPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGR---VIAPEHVDICKN--NNLMWE 138

Query: 707 VRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRA 859
           V  N DG   Y +DA+     +W+ Y+ CARN +EQNL  +Q    IFY+A
Sbjct: 139 VF-NEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQIGTSIFYKA 188
>sp|Q9NQX0|PRDM6_HUMAN PR-domain zinc finger protein 6
          Length = 608

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 35/106 (33%), Positives = 57/106 (53%)
 Frame = +2

Query: 554 SKIPNAGLGVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFKKSLNGYAWVVRENLDGVE 733
           S +P    G+   + I  GT  GP+ G +  +  EK      ++   + W + +  DG  
Sbjct: 266 STVPGLAYGICAAQRIQQGTWIGPFQGVL--LPPEKVQAGAVRNTQ-HLWEIYDQ-DGTL 321

Query: 734 TYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRACVNI 871
            + +D  +  +S+W+RY+ CAR+  EQNL  +QY   IFYRAC++I
Sbjct: 322 QHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDI 367
>sp|Q9UKN5|PRDM4_HUMAN PR-domain zinc finger protein 4
          Length = 801

 Score = 63.5 bits (153), Expect = 7e-10
 Identities = 41/129 (31%), Positives = 67/129 (51%)
 Frame = +2

Query: 467 EHGVVQCKCNNNEMKHVESTLTTGLLIKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGF 646
           EHG V    +         +L   L++++S I  A +GVWT ++I + T FGP +G+   
Sbjct: 390 EHGPVTFVPDTPIESRARLSLPKQLVLRQS-IVGAEVGVWTGETIPVRTCFGPLIGQQSH 448

Query: 647 VKREKDYQFFKKSLNGYAWVVRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVS 826
                ++    K++N + W +  N  GV  + +   D    NW+ +V  ARN EEQNLV+
Sbjct: 449 SMEVAEWT--DKAVN-HIWKIYHN--GVLEFCIITTDENECNWMMFVRKARNREEQNLVA 503

Query: 827 IQYNGLIFY 853
             ++G IF+
Sbjct: 504 YPHDGKIFF 512
>sp|Q13029|PRDM2_HUMAN PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
           (MTE-binding protein) (MTB-ZF) (GATA-3 binding protein
           G3B)
          Length = 1718

 Score = 63.5 bits (153), Expect = 7e-10
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
 Frame = +2

Query: 509 KHVESTLTTGLLIKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFKKSL 688
           +HV   L   + +  S +    +GVW  K I+ G  FGP++G+    K+++     +   
Sbjct: 20  EHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGD----KKKRS----QVKN 71

Query: 689 NGYAW-VVRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYR 856
           N Y W V   NL  +    +DA D  + NWLRYVN A + EEQNL  ++ N  I+Y+
Sbjct: 72  NVYMWEVYYPNLGWM---CIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYK 125
>sp|Q63755|PRDM2_RAT PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
          Length = 1706

 Score = 63.2 bits (152), Expect = 9e-10
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +2

Query: 509 KHVESTLTTGLLIKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFKKSL 688
           +HV   L   + +  S +    +GVW  K I+ G  FGP++G+     ++K  Q      
Sbjct: 19  EHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGD-----KKKRSQVRN--- 70

Query: 689 NGYAW-VVRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYR 856
           N Y W V   NL  +    +DA D  + NWLRYVN A + EEQNL  ++ N  I+Y+
Sbjct: 71  NVYMWEVYYPNLGWM---CIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYK 124
>sp|Q9GZV8|PRD14_HUMAN PR-domain zinc finger protein 14
          Length = 571

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 36/98 (36%), Positives = 49/98 (50%)
 Frame = +2

Query: 578 GVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFKKSLNGYAWVVRENLDGVETYLVDAND 757
           GV+    I  G  FGP+ G++      K Y       N   W + E  DG  ++ +D   
Sbjct: 267 GVFCSSFIAKGVRFGPFQGKVVNASEVKTY-----GDNSVMWEIFE--DGHLSHFIDGKG 319

Query: 758 SMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRACVNI 871
               NW+ YVNCAR  +EQNLV++Q  G IFY +C  I
Sbjct: 320 GT-GNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEI 356
>sp|Q9HAZ2|PRD16_HUMAN PR-domain zinc finger protein 16 (Transcription factor MEL1)
          Length = 1276

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
 Frame = +2

Query: 545 IKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGFVKREKDYQFFK-------KSLNGYAW 703
           +++S IP AGLGVW ++ +  G   GP +       +E D+ + +           G   
Sbjct: 86  LRESSIPGAGLGVWAKRKMEAGERLGPCVVVPRAAAKETDFGWEQILTDVEVSPQEGCIT 145

Query: 704 VVRENLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRACVNID 874
            + E+L G E + VDAN +   +WL+Y+  A + ++QNL   Q +  I+Y+   +I+
Sbjct: 146 KISEDL-GSEKFCVDANQAGAGSWLKYIRVACSCDDQNLTMCQISEQIYYKVIKDIE 201
>sp|Q9NQX1|PRDM5_HUMAN PR-domain zinc finger protein 5
          Length = 630

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
 Frame = +2

Query: 545 IKKSKIPNAGLGVWTRKSIVIGTTFGPYLGEIGF---VKREKDYQFFKKSLNGYAWVVRE 715
           +K S++ + G+G++T + +  G  FGP+ GE      +    DY+          W VR 
Sbjct: 12  LKSSRVQD-GMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLM--------WEVRG 62

Query: 716 NLDGVETYLVDANDSMRSNWLRYVNCARNAEEQNLVSIQYNGLIFYRACVNID 874
           +  G   Y++DA +   SNWLR+V+ A + E++NL +IQ    IFY A  +I+
Sbjct: 63  S-KGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEGENIFYLAVEDIE 114
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,900,004
Number of Sequences: 369166
Number of extensions: 2201872
Number of successful extensions: 5741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5725
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)