Planaria EST Database


DrC_02008

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02008
         (888 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AB2|EX5A_BUCBP  Exodeoxyribonuclease V alpha chain           33   0.81 
sp|Q12674|ATC8_YEAST  Probable phospholipid-transporting ATP...    31   4.0  
sp|Q9CKY2|YE69_PASMU  Hypothetical protein PM1469                  31   4.0  
>sp|Q89AB2|EX5A_BUCBP Exodeoxyribonuclease V alpha chain
          Length = 618

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
 Frame = +2

Query: 539 NTSIVQSIRSRIYPYVLDLRLNVVNEWRFRDSSSVFKI-----KVEHTNIKT------NK 685
           N   +++I+   +  + D  + +   +RF+  S +FKI     K +  NIKT      N 
Sbjct: 338 NRITIKTIKKHQFSNINDKIIMLKKSYRFKKKSDIFKISEMLTKNKINNIKTLYQNINND 397

Query: 686 IKGKPISESLRNDSCIYGI-DLFEEIWSHLERS-ESLKFFEKFGLQKGFICYILRYFYVV 859
           +  K IS     ++ I+ I + + + WS L++S   LK    F   K  +C +    + +
Sbjct: 398 VNFKQISSKTNYNNIIFEITNSYSKYWSALKQSLPFLKIINIFNNYK-ILCILKNGLFGI 456

Query: 860 TKNN 871
           T+ N
Sbjct: 457 TELN 460
>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3
          Length = 1656

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
 Frame = +2

Query: 200 NAHITHIASYISRNKVTPENIFHLPGMATFLEHYPHVRESIKFSFGFYTL---------K 352
           N+H++  AS IS ++   ENI     +  F++ YP    S K  F F +L         K
Sbjct: 686 NSHLSKQASVISPSETFSENIKSSFDLIQFIQRYPTALFSQKAKFFFLSLALCHSCLPKK 745

Query: 353 HYDENQDNSLITYQNRS 403
            ++E+     I YQ+ S
Sbjct: 746 THNESIGEDSIEYQSSS 762
>sp|Q9CKY2|YE69_PASMU Hypothetical protein PM1469
          Length = 579

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 10/39 (25%), Positives = 27/39 (69%)
 Frame = -1

Query: 732 IHESLRRLSEIGFPLILLVLILVCSTLILNTLEESRNLH 616
           ++ ++ RL+++   ++L  +I +C+ L+LN++E   N++
Sbjct: 118 VYNTVSRLTQLALAIVLAGIICICAVLVLNSIEYLFNIN 156
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,987,973
Number of Sequences: 369166
Number of extensions: 1803994
Number of successful extensions: 4467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)