Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02008
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q89AB2|EX5A_BUCBP Exodeoxyribonuclease V alpha chain 33 0.81
sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATP... 31 4.0
sp|Q9CKY2|YE69_PASMU Hypothetical protein PM1469 31 4.0
>sp|Q89AB2|EX5A_BUCBP Exodeoxyribonuclease V alpha chain
Length = 618
Score = 33.5 bits (75), Expect = 0.81
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Frame = +2
Query: 539 NTSIVQSIRSRIYPYVLDLRLNVVNEWRFRDSSSVFKI-----KVEHTNIKT------NK 685
N +++I+ + + D + + +RF+ S +FKI K + NIKT N
Sbjct: 338 NRITIKTIKKHQFSNINDKIIMLKKSYRFKKKSDIFKISEMLTKNKINNIKTLYQNINND 397
Query: 686 IKGKPISESLRNDSCIYGI-DLFEEIWSHLERS-ESLKFFEKFGLQKGFICYILRYFYVV 859
+ K IS ++ I+ I + + + WS L++S LK F K +C + + +
Sbjct: 398 VNFKQISSKTNYNNIIFEITNSYSKYWSALKQSLPFLKIINIFNNYK-ILCILKNGLFGI 456
Query: 860 TKNN 871
T+ N
Sbjct: 457 TELN 460
>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3
Length = 1656
Score = 31.2 bits (69), Expect = 4.0
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +2
Query: 200 NAHITHIASYISRNKVTPENIFHLPGMATFLEHYPHVRESIKFSFGFYTL---------K 352
N+H++ AS IS ++ ENI + F++ YP S K F F +L K
Sbjct: 686 NSHLSKQASVISPSETFSENIKSSFDLIQFIQRYPTALFSQKAKFFFLSLALCHSCLPKK 745
Query: 353 HYDENQDNSLITYQNRS 403
++E+ I YQ+ S
Sbjct: 746 THNESIGEDSIEYQSSS 762
>sp|Q9CKY2|YE69_PASMU Hypothetical protein PM1469
Length = 579
Score = 31.2 bits (69), Expect = 4.0
Identities = 10/39 (25%), Positives = 27/39 (69%)
Frame = -1
Query: 732 IHESLRRLSEIGFPLILLVLILVCSTLILNTLEESRNLH 616
++ ++ RL+++ ++L +I +C+ L+LN++E N++
Sbjct: 118 VYNTVSRLTQLALAIVLAGIICICAVLVLNSIEYLFNIN 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,987,973
Number of Sequences: 369166
Number of extensions: 1803994
Number of successful extensions: 4467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)