Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_013_H22 (888 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q89AB2|EX5A_BUCBP Exodeoxyribonuclease V alpha chain 33 0.81 sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATP... 31 4.0 sp|Q9CKY2|YE69_PASMU Hypothetical protein PM1469 31 4.0
>sp|Q89AB2|EX5A_BUCBP Exodeoxyribonuclease V alpha chain Length = 618 Score = 33.5 bits (75), Expect = 0.81 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Frame = +2 Query: 539 NTSIVQSIRSRIYPYVLDLRLNVVNEWRFRDSSSVFKI-----KVEHTNIKT------NK 685 N +++I+ + + D + + +RF+ S +FKI K + NIKT N Sbjct: 338 NRITIKTIKKHQFSNINDKIIMLKKSYRFKKKSDIFKISEMLTKNKINNIKTLYQNINND 397 Query: 686 IKGKPISESLRNDSCIYGI-DLFEEIWSHLERS-ESLKFFEKFGLQKGFICYILRYFYVV 859 + K IS ++ I+ I + + + WS L++S LK F K +C + + + Sbjct: 398 VNFKQISSKTNYNNIIFEITNSYSKYWSALKQSLPFLKIINIFNNYK-ILCILKNGLFGI 456 Query: 860 TKNN 871 T+ N Sbjct: 457 TELN 460
>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3 Length = 1656 Score = 31.2 bits (69), Expect = 4.0 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%) Frame = +2 Query: 200 NAHITHIASYISRNKVTPENIFHLPGMATFLEHYPHVRESIKFSFGFYTL---------K 352 N+H++ AS IS ++ ENI + F++ YP S K F F +L K Sbjct: 686 NSHLSKQASVISPSETFSENIKSSFDLIQFIQRYPTALFSQKAKFFFLSLALCHSCLPKK 745 Query: 353 HYDENQDNSLITYQNRS 403 ++E+ I YQ+ S Sbjct: 746 THNESIGEDSIEYQSSS 762
>sp|Q9CKY2|YE69_PASMU Hypothetical protein PM1469 Length = 579 Score = 31.2 bits (69), Expect = 4.0 Identities = 10/39 (25%), Positives = 27/39 (69%) Frame = -1 Query: 732 IHESLRRLSEIGFPLILLVLILVCSTLILNTLEESRNLH 616 ++ ++ RL+++ ++L +I +C+ L+LN++E N++ Sbjct: 118 VYNTVSRLTQLALAIVLAGIICICAVLVLNSIEYLFNIN 156
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,987,973 Number of Sequences: 369166 Number of extensions: 1803994 Number of successful extensions: 4467 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4467 length of database: 68,354,980 effective HSP length: 110 effective length of database: 48,034,130 effective search space used: 8886314050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)