Planaria EST Database


DrC_02005

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02005
         (354 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31723|MAN12_PENCI  Mannosyl-oligosaccharide alpha-1,2-ma...    32   0.45 
sp|P00919|CAH2_RABIT  Carbonic anhydrase 2 (Carbonic anhydra...    29   2.9  
sp|P35504|UD15_HUMAN  UDP-glucuronosyltransferase 1-5 precur...    28   6.5  
sp|Q95917|NU4M_POLOR  NADH-ubiquinone oxidoreductase chain 4...    28   6.5  
sp|P22310|UD14_HUMAN  UDP-glucuronosyltransferase 1-4 precur...    28   6.5  
sp|Q892Q8|HRCA_CLOTE  Heat-inducible transcription repressor...    28   8.5  
>sp|P31723|MAN12_PENCI Mannosyl-oligosaccharide alpha-1,2-mannosidase precursor
           (Man(9)-alpha-mannosidase)
          Length = 511

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = +1

Query: 37  PDGTITRKMPSENF--------CFEGNCSFLFGGRIFHRKQFNSFSHSVLDKCE 174
           PD T      + N+        CF+G  SFL GG +  R+ F  F   ++D CE
Sbjct: 310 PDLTFLSSYSNRNYDLSSQHLTCFDGG-SFLLGGTVLDRQDFIDFGLELVDGCE 362
>sp|P00919|CAH2_RABIT Carbonic anhydrase 2 (Carbonic anhydrase II) (Carbonate dehydratase
           II) (CA-II)
          Length = 259

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 116 EFFIANNLTASPIQCWTNARMYEICVSPVPTCFELKHPL 232
           +F IAN    SPI   TNA  ++  + P+  C+E  HP+
Sbjct: 18  DFPIANGERQSPIDIDTNAAKHDPSLKPLRVCYE--HPI 54
>sp|P35504|UD15_HUMAN UDP-glucuronosyltransferase 1-5 precursor, microsomal
           (UDP-glucuronosyltransferase 1A5) (UDPGT) (UGT1*5)
           (UGT1-05) (UGT1.5) (UGT-1E) (UGT1E)
          Length = 534

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 41  MAQLHARCHRKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVSPVPTCFEL 220
           +  LHAR H+ + +  E+  +  E+ FF       S    WT      + +    + FE 
Sbjct: 48  LRDLHARGHQVVVLTLEVNMYIKEENFFTLTTYAIS----WTQDEFDRLLLGHTQSFFET 103

Query: 221 KHPL 232
           +H L
Sbjct: 104 EHLL 107
>sp|Q95917|NU4M_POLOR NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 459

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 FIANNLTASPIQCWTNARMYEICVSPVPTCFELKHPL 232
           FI+ NL + P   WTN  ++  CV    T F +K PL
Sbjct: 177 FISMNLISIPPNTWTNTFLWVACV----TAFLVKMPL 209
>sp|P22310|UD14_HUMAN UDP-glucuronosyltransferase 1-4 precursor, microsomal
           (UDP-glucuronosyltransferase 1A4) (UDPGT) (UGT1*4)
           (UGT1-04) (UGT1.4) (UGT-1D) (UGT1D) (Bilirubin-specific
           UDPGT isozyme 2) (HUG-BR2)
          Length = 534

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 41  MAQLHARCHRKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVSPVPTCFEL 220
           + +LHAR H+ + +  E+     E++FF    LTA  +  WT      + +      FE 
Sbjct: 48  LRELHARGHQAVVLTPEVNMHIKEEKFF---TLTAYAVP-WTQKEFDRVTLGYTQGFFET 103

Query: 221 KHPLE 235
           +H L+
Sbjct: 104 EHLLK 108
>sp|Q892Q8|HRCA_CLOTE Heat-inducible transcription repressor hrcA
          Length = 351

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 68  RKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVS 196
           RKI +L+ I+H Y++         TA P+   T A+ Y++ VS
Sbjct: 14  RKIKILQAIIHDYIQ---------TAEPVGSRTIAKKYDLGVS 47
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,958,675
Number of Sequences: 369166
Number of extensions: 581884
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)