Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H11
(354 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31723|MAN12_PENCI Mannosyl-oligosaccharide alpha-1,2-ma... 32 0.45
sp|P00919|CAH2_RABIT Carbonic anhydrase 2 (Carbonic anhydra... 29 2.9
sp|P35504|UD15_HUMAN UDP-glucuronosyltransferase 1-5 precur... 28 6.5
sp|Q95917|NU4M_POLOR NADH-ubiquinone oxidoreductase chain 4... 28 6.5
sp|P22310|UD14_HUMAN UDP-glucuronosyltransferase 1-4 precur... 28 6.5
sp|Q892Q8|HRCA_CLOTE Heat-inducible transcription repressor... 28 8.5
>sp|P31723|MAN12_PENCI Mannosyl-oligosaccharide alpha-1,2-mannosidase precursor
(Man(9)-alpha-mannosidase)
Length = 511
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 37 PDGTITRKMPSENF--------CFEGNCSFLFGGRIFHRKQFNSFSHSVLDKCE 174
PD T + N+ CF+G SFL GG + R+ F F ++D CE
Sbjct: 310 PDLTFLSSYSNRNYDLSSQHLTCFDGG-SFLLGGTVLDRQDFIDFGLELVDGCE 362
>sp|P00919|CAH2_RABIT Carbonic anhydrase 2 (Carbonic anhydrase II) (Carbonate dehydratase
II) (CA-II)
Length = 259
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 116 EFFIANNLTASPIQCWTNARMYEICVSPVPTCFELKHPL 232
+F IAN SPI TNA ++ + P+ C+E HP+
Sbjct: 18 DFPIANGERQSPIDIDTNAAKHDPSLKPLRVCYE--HPI 54
>sp|P35504|UD15_HUMAN UDP-glucuronosyltransferase 1-5 precursor, microsomal
(UDP-glucuronosyltransferase 1A5) (UDPGT) (UGT1*5)
(UGT1-05) (UGT1.5) (UGT-1E) (UGT1E)
Length = 534
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 41 MAQLHARCHRKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVSPVPTCFEL 220
+ LHAR H+ + + E+ + E+ FF S WT + + + FE
Sbjct: 48 LRDLHARGHQVVVLTLEVNMYIKEENFFTLTTYAIS----WTQDEFDRLLLGHTQSFFET 103
Query: 221 KHPL 232
+H L
Sbjct: 104 EHLL 107
>sp|Q95917|NU4M_POLOR NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 459
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 122 FIANNLTASPIQCWTNARMYEICVSPVPTCFELKHPL 232
FI+ NL + P WTN ++ CV T F +K PL
Sbjct: 177 FISMNLISIPPNTWTNTFLWVACV----TAFLVKMPL 209
>sp|P22310|UD14_HUMAN UDP-glucuronosyltransferase 1-4 precursor, microsomal
(UDP-glucuronosyltransferase 1A4) (UDPGT) (UGT1*4)
(UGT1-04) (UGT1.4) (UGT-1D) (UGT1D) (Bilirubin-specific
UDPGT isozyme 2) (HUG-BR2)
Length = 534
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 41 MAQLHARCHRKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVSPVPTCFEL 220
+ +LHAR H+ + + E+ E++FF LTA + WT + + FE
Sbjct: 48 LRELHARGHQAVVLTPEVNMHIKEEKFF---TLTAYAVP-WTQKEFDRVTLGYTQGFFET 103
Query: 221 KHPLE 235
+H L+
Sbjct: 104 EHLLK 108
>sp|Q892Q8|HRCA_CLOTE Heat-inducible transcription repressor hrcA
Length = 351
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 68 RKISVLREIVHFYLEDEFFIANNLTASPIQCWTNARMYEICVS 196
RKI +L+ I+H Y++ TA P+ T A+ Y++ VS
Sbjct: 14 RKIKILQAIIHDYIQ---------TAEPVGSRTIAKKYDLGVS 47
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,958,675
Number of Sequences: 369166
Number of extensions: 581884
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)