Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01925 (840 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P25228|RAB3_DROME Ras-related protein Rab-3 334 2e-91 sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 317 3e-86 sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C 315 1e-85 sp|P62824|RAB3C_RAT Ras-related protein Rab-3C >gi|51338605... 314 2e-85 sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A >gi|517027... 313 5e-85 sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A >gi|131801... 313 5e-85 sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B 310 2e-84 sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B 310 4e-84 sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B (SMG P25B) 310 4e-84 sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B 309 5e-84
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 Length = 220 Score = 334 bits (857), Expect = 2e-91 Identities = 158/189 (83%), Positives = 176/189 (93%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D ADQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVFR DKRV Sbjct: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYD+TNED+FN VQDWVTQIKTYSWDNAQ+I Sbjct: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVI 130 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+E+ R +S ER +QLAD L ++FFETSAKEN+NVKAVFERLVD+ICDKM+E + Sbjct: 131 LVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESL 190 Query: 602 DSSPALVNG 628 D+ P LV G Sbjct: 191 DADPTLVGG 199
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 Length = 219 Score = 317 bits (811), Expect = 3e-86 Identities = 153/204 (75%), Positives = 175/204 (85%), Gaps = 1/204 (0%) Frame = +2 Query: 74 DQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRVKLQI 253 DQNFDYMFKLL+IGNSSVGKTSFLFRY D+SFTSAFV+TVGIDFKVKTVFR DKRVKLQI Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQI 75 Query: 254 WDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQIILVGN 433 WDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSW+NAQ++LVGN Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGN 135 Query: 434 KCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECIDSSP 613 KCD++ R VS +R +QLAD L L+FFETSAKENINVKAVFE+LV++ICDKMAE +D P Sbjct: 136 KCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDP 195 Query: 614 -ALVNGHLLRSINDDESSESRCFC 682 G L + + ++ +C C Sbjct: 196 QQQPKGQKLEANPTQKPAQQQCNC 219
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C Length = 227 Score = 315 bits (806), Expect = 1e-85 Identities = 146/186 (78%), Positives = 170/186 (91%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+ Sbjct: 20 KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 80 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+E+ R +STER + L + L +FFETSAK+NINVK FERLVD+ICDKM+E + Sbjct: 140 LVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199 Query: 602 DSSPAL 619 ++ PA+ Sbjct: 200 ETDPAI 205
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C Length = 227 Score = 314 bits (804), Expect = 2e-85 Identities = 146/186 (78%), Positives = 170/186 (91%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+ Sbjct: 20 KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 80 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 L GNKCD+E+ R VSTER ++L + L +FFETSAK+NINVK FERLVD+ICDKM+E + Sbjct: 140 LAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199 Query: 602 DSSPAL 619 ++ PA+ Sbjct: 200 ETDPAI 205
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A sp|P63012|RAB3A_RAT Ras-related protein Rab-3A Length = 220 Score = 313 bits (801), Expect = 5e-85 Identities = 145/189 (76%), Positives = 171/189 (90%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 ++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+ Sbjct: 12 KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++ Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+E+ R VS+ER +QLAD+L +FFE SAK+NINVK FERLVDVIC+KM+E + Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191 Query: 602 DSSPALVNG 628 D++ V G Sbjct: 192 DTADPAVTG 200
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A Length = 220 Score = 313 bits (801), Expect = 5e-85 Identities = 145/189 (76%), Positives = 171/189 (90%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 ++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+ Sbjct: 12 KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++ Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+E+ R VS+ER +QLAD+L +FFE SAK+NINVK FERLVDVIC+KM+E + Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191 Query: 602 DSSPALVNG 628 D++ V G Sbjct: 192 DTADPAVTG 200
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B Length = 219 Score = 310 bits (795), Expect = 2e-84 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 RD +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV Sbjct: 12 RDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+EE R + TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ + Sbjct: 132 LVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191 Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682 D+ P+++ ++D + C C Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B Length = 219 Score = 310 bits (793), Expect = 4e-84 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ + Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191 Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682 D+ P+++ ++D + C C Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B (SMG P25B) Length = 219 Score = 310 bits (793), Expect = 4e-84 Identities = 145/187 (77%), Positives = 168/187 (89%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ + Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTL 191 Query: 602 DSSPALV 622 D+ P+L+ Sbjct: 192 DTDPSLL 198
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B Length = 219 Score = 309 bits (792), Expect = 5e-84 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Frame = +2 Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241 +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71 Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131 Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601 LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ + Sbjct: 132 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSL 191 Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682 D+ P+++ ++D + C C Sbjct: 192 DTDPSMLGSSKNTRLSDTPPLLQQNCSC 219
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,345,713 Number of Sequences: 369166 Number of extensions: 1621437 Number of successful extensions: 5331 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4860 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8197207050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)