Planaria EST Database


DrC_01925

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01925
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25228|RAB3_DROME  Ras-related protein Rab-3                   334   2e-91
sp|Q94986|RAB3_CAEEL  Ras-related protein Rab-3                   317   3e-86
sp|Q96E17|RAB3C_HUMAN  Ras-related protein Rab-3C                 315   1e-85
sp|P62824|RAB3C_RAT  Ras-related protein Rab-3C >gi|51338605...   314   2e-85
sp|P63011|RAB3A_MOUSE  Ras-related protein Rab-3A >gi|517027...   313   5e-85
sp|Q4R4R9|RAB3A_MACFA  Ras-related protein Rab-3A >gi|131801...   313   5e-85
sp|Q63941|RAB3B_RAT  Ras-related protein Rab-3B                   310   2e-84
sp|Q9CZT8|RAB3B_MOUSE  Ras-related protein Rab-3B                 310   4e-84
sp|P10948|RAB3B_BOVIN  Ras-related protein Rab-3B (SMG P25B)      310   4e-84
sp|P20337|RAB3B_HUMAN  Ras-related protein Rab-3B                 309   5e-84
>sp|P25228|RAB3_DROME Ras-related protein Rab-3
          Length = 220

 Score =  334 bits (857), Expect = 2e-91
 Identities = 158/189 (83%), Positives = 176/189 (93%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D ADQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVFR DKRV
Sbjct: 11  KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYD+TNED+FN VQDWVTQIKTYSWDNAQ+I
Sbjct: 71  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVI 130

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+E+ R +S ER +QLAD L ++FFETSAKEN+NVKAVFERLVD+ICDKM+E +
Sbjct: 131 LVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESL 190

Query: 602 DSSPALVNG 628
           D+ P LV G
Sbjct: 191 DADPTLVGG 199
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3
          Length = 219

 Score =  317 bits (811), Expect = 3e-86
 Identities = 153/204 (75%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
 Frame = +2

Query: 74  DQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRVKLQI 253
           DQNFDYMFKLL+IGNSSVGKTSFLFRY D+SFTSAFV+TVGIDFKVKTVFR DKRVKLQI
Sbjct: 16  DQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQI 75

Query: 254 WDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQIILVGN 433
           WDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSW+NAQ++LVGN
Sbjct: 76  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGN 135

Query: 434 KCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECIDSSP 613
           KCD++  R VS +R +QLAD L L+FFETSAKENINVKAVFE+LV++ICDKMAE +D  P
Sbjct: 136 KCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDP 195

Query: 614 -ALVNGHLLRSINDDESSESRCFC 682
                G  L +    + ++ +C C
Sbjct: 196 QQQPKGQKLEANPTQKPAQQQCNC 219
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C
          Length = 227

 Score =  315 bits (806), Expect = 1e-85
 Identities = 146/186 (78%), Positives = 170/186 (91%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+
Sbjct: 20  KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 80  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+E+ R +STER + L + L  +FFETSAK+NINVK  FERLVD+ICDKM+E +
Sbjct: 140 LVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199

Query: 602 DSSPAL 619
           ++ PA+
Sbjct: 200 ETDPAI 205
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C
 sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C
          Length = 227

 Score =  314 bits (804), Expect = 2e-85
 Identities = 146/186 (78%), Positives = 170/186 (91%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+
Sbjct: 20  KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 80  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           L GNKCD+E+ R VSTER ++L + L  +FFETSAK+NINVK  FERLVD+ICDKM+E +
Sbjct: 140 LAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199

Query: 602 DSSPAL 619
           ++ PA+
Sbjct: 200 ETDPAI 205
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A
 sp|P63012|RAB3A_RAT Ras-related protein Rab-3A
          Length = 220

 Score =  313 bits (801), Expect = 5e-85
 Identities = 145/189 (76%), Positives = 171/189 (90%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           ++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+
Sbjct: 12  KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+E+ R VS+ER +QLAD+L  +FFE SAK+NINVK  FERLVDVIC+KM+E +
Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191

Query: 602 DSSPALVNG 628
           D++   V G
Sbjct: 192 DTADPAVTG 200
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A
 sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A
          Length = 220

 Score =  313 bits (801), Expect = 5e-85
 Identities = 145/189 (76%), Positives = 171/189 (90%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           ++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+
Sbjct: 12  KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+E+ R VS+ER +QLAD+L  +FFE SAK+NINVK  FERLVDVIC+KM+E +
Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191

Query: 602 DSSPALVNG 628
           D++   V G
Sbjct: 192 DTADPAVTG 200
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B
          Length = 219

 Score =  310 bits (795), Expect = 2e-84
 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           RD +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12  RDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+EE R + TE+ + LA+ L  DFFE SAKENI+V+  FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191

Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
           D+ P+++       ++D     +  C C
Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B
          Length = 219

 Score =  310 bits (793), Expect = 4e-84
 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12  KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+EE R V TE+ + LA+ L  DFFE SAKENI+V+  FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191

Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
           D+ P+++       ++D     +  C C
Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B (SMG P25B)
          Length = 219

 Score =  310 bits (793), Expect = 4e-84
 Identities = 145/187 (77%), Positives = 168/187 (89%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12  KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+EE R V TE+ + LA+ L  DFFE SAKENI+V+  FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTL 191

Query: 602 DSSPALV 622
           D+ P+L+
Sbjct: 192 DTDPSLL 198
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B
          Length = 219

 Score =  309 bits (792), Expect = 5e-84
 Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
 Frame = +2

Query: 62  RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
           +D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12  KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71

Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
           KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131

Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
           LVGNKCD+EE R V TE+ + LA+ L  DFFE SAKENI+V+  FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSL 191

Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
           D+ P+++       ++D     +  C C
Sbjct: 192 DTDPSMLGSSKNTRLSDTPPLLQQNCSC 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,345,713
Number of Sequences: 369166
Number of extensions: 1621437
Number of successful extensions: 5331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4860
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)