Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C05
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25228|RAB3_DROME Ras-related protein Rab-3 334 2e-91
sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 317 3e-86
sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C 315 1e-85
sp|P62824|RAB3C_RAT Ras-related protein Rab-3C >gi|51338605... 314 2e-85
sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A >gi|517027... 313 5e-85
sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A >gi|131801... 313 5e-85
sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B 310 2e-84
sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B 310 4e-84
sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B (SMG P25B) 310 4e-84
sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B 309 5e-84
>sp|P25228|RAB3_DROME Ras-related protein Rab-3
Length = 220
Score = 334 bits (857), Expect = 2e-91
Identities = 158/189 (83%), Positives = 176/189 (93%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D ADQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVFR DKRV
Sbjct: 11 KDAADQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRV 70
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYD+TNED+FN VQDWVTQIKTYSWDNAQ+I
Sbjct: 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVI 130
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+E+ R +S ER +QLAD L ++FFETSAKEN+NVKAVFERLVD+ICDKM+E +
Sbjct: 131 LVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSESL 190
Query: 602 DSSPALVNG 628
D+ P LV G
Sbjct: 191 DADPTLVGG 199
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3
Length = 219
Score = 317 bits (811), Expect = 3e-86
Identities = 153/204 (75%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
Frame = +2
Query: 74 DQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRVKLQI 253
DQNFDYMFKLL+IGNSSVGKTSFLFRY D+SFTSAFV+TVGIDFKVKTVFR DKRVKLQI
Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQI 75
Query: 254 WDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQIILVGN 433
WDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSW+NAQ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGN 135
Query: 434 KCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECIDSSP 613
KCD++ R VS +R +QLAD L L+FFETSAKENINVKAVFE+LV++ICDKMAE +D P
Sbjct: 136 KCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDP 195
Query: 614 -ALVNGHLLRSINDDESSESRCFC 682
G L + + ++ +C C
Sbjct: 196 QQQPKGQKLEANPTQKPAQQQCNC 219
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C
Length = 227
Score = 315 bits (806), Expect = 1e-85
Identities = 146/186 (78%), Positives = 170/186 (91%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+
Sbjct: 20 KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 80 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+E+ R +STER + L + L +FFETSAK+NINVK FERLVD+ICDKM+E +
Sbjct: 140 LVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 602 DSSPAL 619
++ PA+
Sbjct: 200 ETDPAI 205
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C
sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C
Length = 227
Score = 314 bits (804), Expect = 2e-85
Identities = 146/186 (78%), Positives = 170/186 (91%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD+SFTSAFV+TVGIDFKVKTVF+ +KR+
Sbjct: 20 KDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRI 79
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 80 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI 139
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
L GNKCD+E+ R VSTER ++L + L +FFETSAK+NINVK FERLVD+ICDKM+E +
Sbjct: 140 LAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
Query: 602 DSSPAL 619
++ PA+
Sbjct: 200 ETDPAI 205
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A
sp|P63012|RAB3A_RAT Ras-related protein Rab-3A
Length = 220
Score = 313 bits (801), Expect = 5e-85
Identities = 145/189 (76%), Positives = 171/189 (90%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+
Sbjct: 12 KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+E+ R VS+ER +QLAD+L +FFE SAK+NINVK FERLVDVIC+KM+E +
Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191
Query: 602 DSSPALVNG 628
D++ V G
Sbjct: 192 DTADPAVTG 200
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A
sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A
Length = 220
Score = 313 bits (801), Expect = 5e-85
Identities = 145/189 (76%), Positives = 171/189 (90%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
++ +DQNFDYMFK+L+IGNSSVGKTSFLFRYAD+SFT AFV+TVGIDFKVKT++R DKR+
Sbjct: 12 KESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ++
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+E+ R VS+ER +QLAD+L +FFE SAK+NINVK FERLVDVIC+KM+E +
Sbjct: 132 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191
Query: 602 DSSPALVNG 628
D++ V G
Sbjct: 192 DTADPAVTG 200
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B
Length = 219
Score = 310 bits (795), Expect = 2e-84
Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
RD +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12 RDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+EE R + TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191
Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
D+ P+++ ++D + C C
Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B
Length = 219
Score = 310 bits (793), Expect = 4e-84
Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSM 191
Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
D+ P+++ ++D + C C
Sbjct: 192 DTDPSVLGASKTTRLSDTPPLLQQNCSC 219
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B (SMG P25B)
Length = 219
Score = 310 bits (793), Expect = 4e-84
Identities = 145/187 (77%), Positives = 168/187 (89%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDTL 191
Query: 602 DSSPALV 622
D+ P+L+
Sbjct: 192 DTDPSLL 198
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B
Length = 219
Score = 309 bits (792), Expect = 5e-84
Identities = 147/208 (70%), Positives = 174/208 (83%), Gaps = 1/208 (0%)
Frame = +2
Query: 62 RDLADQNFDYMFKLLLIGNSSVGKTSFLFRYADNSFTSAFVATVGIDFKVKTVFRQDKRV 241
+D +DQNFDYMFKLL+IGNSSVGKTSFLFRYAD++FT AFV+TVGIDFKVKTV+R +KRV
Sbjct: 12 KDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 71
Query: 242 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEDTFNCVQDWVTQIKTYSWDNAQII 421
KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE++FN VQDW TQIKTYSWDNAQ+I
Sbjct: 72 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 131
Query: 422 LVGNKCDLEENRTVSTERAKQLADYLNLDFFETSAKENINVKAVFERLVDVICDKMAECI 601
LVGNKCD+EE R V TE+ + LA+ L DFFE SAKENI+V+ FERLVD ICDKM++ +
Sbjct: 132 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSL 191
Query: 602 DSSPALVNGHLLRSINDDES-SESRCFC 682
D+ P+++ ++D + C C
Sbjct: 192 DTDPSMLGSSKNTRLSDTPPLLQQNCSC 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,345,713
Number of Sequences: 369166
Number of extensions: 1621437
Number of successful extensions: 5331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4860
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)