Planaria EST Database


DrC_01888

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01888
         (931 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IVD9|NUDC3_HUMAN  NudC domain containing protein 3           115   2e-25
sp|Q8R1N4|NUDC3_MOUSE  NudC domain containing protein 3           111   3e-24
sp|Q63525|NUDC_RAT  Nuclear migration protein nudC (Nuclear ...    87   5e-17
sp|O35685|NUDC_MOUSE  Nuclear migration protein nudC (Nuclea...    87   9e-17
sp|Q9Y266|NUDC_HUMAN  Nuclear migration protein nudC (Nuclea...    82   2e-15
sp|Q5ZIN1|NUDC_CHICK  Nuclear migration protein nudC (Nuclea...    82   2e-15
sp|P17624|NUDC_EMENI  Nuclear movement protein nudC                69   2e-11
sp|P13395|SPTCA_DROME  Spectrin alpha chain                        34   0.51 
sp|P40010|NUG1_YEAST  Nuclear GTP-binding protein NUG1 (Nucl...    33   1.1  
sp|O51446|RL6_BORBU  50S ribosomal protein L6                      32   3.3  
>sp|Q8IVD9|NUDC3_HUMAN NudC domain containing protein 3
          Length = 361

 Score =  115 bits (287), Expect = 2e-25
 Identities = 61/176 (34%), Positives = 98/176 (55%)
 Frame = +1

Query: 367 ESYNGSVGDCYTWSQMIGELDIRIKVPIIXXXXXXXXXXXXXXHINVSYTFQNEVIPVID 546
           +SYNG+V + YTWSQ   +L++R+ VP                 I V+   +N    +++
Sbjct: 180 DSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGECVLME 239

Query: 547 KELSWDIKKNEVFWSFDPKENKILISVEKVQERWWEALFVGDVTINTRKIDCSRPMSDLD 726
            +L+  I      WS +P +  +L+++ KV E WW A+  G+  I+  KI+  R M+ +D
Sbjct: 240 GKLTHKINTESSLWSLEPGKC-VLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVD 298

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKKAWDLEGSPFKGKDFDLSNIDI 894
           +E QA + +L  D  QK  G P S + K+++ LKK WD EGSPF+G+ FD +  +I
Sbjct: 299 EEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNI 354

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = +3

Query: 33  EKYDNILLDVIQQVNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLIL 203
           E YD  LL ++Q V N+ +FL ++FGFL R+TD Y L+ +    MGFPPG A+ L+L
Sbjct: 7   ELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVL 63
>sp|Q8R1N4|NUDC3_MOUSE NudC domain containing protein 3
          Length = 363

 Score =  111 bits (277), Expect = 3e-24
 Identities = 59/176 (33%), Positives = 96/176 (54%)
 Frame = +1

Query: 367 ESYNGSVGDCYTWSQMIGELDIRIKVPIIXXXXXXXXXXXXXXHINVSYTFQNEVIPVID 546
           +SYNG++ + Y WSQ   +L++R+ VP                 I V+   +N    +++
Sbjct: 182 DSYNGAIRENYIWSQDYTDLEVRVPVPKHVMKGKQVSVALSSGTIRVAMVEENGERVLME 241

Query: 547 KELSWDIKKNEVFWSFDPKENKILISVEKVQERWWEALFVGDVTINTRKIDCSRPMSDLD 726
            +L+  I      WS +P    +L+++ KV E WW A+  G+  I+  KI+  R M+ +D
Sbjct: 242 GKLTHKINTESSLWSLEPGRC-VLVNLSKVGEYWWSAILEGEEPIDIDKINKERSMATVD 300

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKKAWDLEGSPFKGKDFDLSNIDI 894
           +E QA + +L  D  QK  G P S + K+++ LKK WD EGSPF+G+ FD +  +I
Sbjct: 301 EEEQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNI 356

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = +3

Query: 33  EKYDNILLDVIQQVNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLIL 203
           E YD  LL ++Q V N+ +FL ++FGFL R+TD Y L+ +    MGFPPG A+ L+L
Sbjct: 7   ELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVL 63
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC (Nuclear distribution protein C
           homolog) (c15)
          Length = 332

 Score = 87.4 bits (215), Expect = 5e-17
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
 Frame = +1

Query: 376 NGSVGDCYTWSQMIGELDIRIKVPI-IXXXXXXXXXXXXXXHINVSYTFQNEVIPVIDKE 552
           NG+    Y W+Q + ELD+ +   +                H+ V    Q    PVID E
Sbjct: 166 NGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQ---APVIDGE 222

Query: 553 LSWDIKKNEVFWSFDPKENKILISVEKVQE-RWWEALFVGDVTINTRKIDCSRP-MSDLD 726
           L  ++K  E  W  +  +  + + +EK+ +  WW  L   D  INT+KI+     +SDLD
Sbjct: 223 LYNEVKVEESSWLIEDGK-VVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLD 281

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKKAWD 840
            E ++ + K+M+D RQK +GLPTSD+QK  + LKK  D
Sbjct: 282 SETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMD 319

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  EKYDNILLDVIQQ-VNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLI 200
           E++D +LL + QQ    +   ++  F FLRR+TD +         +G   G AEKLI
Sbjct: 8   ERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFF---------IGGEEGMAEKLI 55
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC (Nuclear distribution protein C
           homolog) (Silica-induced gene 92 protein) (SIG-92)
          Length = 332

 Score = 86.7 bits (213), Expect = 9e-17
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
 Frame = +1

Query: 376 NGSVGDCYTWSQMIGELDIRIKVPI-IXXXXXXXXXXXXXXHINVSYTFQNEVIPVIDKE 552
           NG+    Y W+Q + ELD+ +   +                H+ V    Q    PV+D E
Sbjct: 166 NGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQP---PVVDGE 222

Query: 553 LSWDIKKNEVFWSFDPKENKILISVEKVQE-RWWEALFVGDVTINTRKIDCSRP-MSDLD 726
           L  ++K  E  W  +  +  + + +EK+ +  WW  L   D  INT+KI+     +SDLD
Sbjct: 223 LYNEVKVEESSWLIEDGK-VVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLD 281

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKKAWD 840
            E ++ + K+M+D RQK +GLPTSD+QK  + LKK  D
Sbjct: 282 SETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMD 319

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  EKYDNILLDVIQQ-VNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLI 200
           E++D +LL + QQ    +   ++  F FLRR+TD +         +G   G AEKLI
Sbjct: 8   ERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFF---------IGGEEGMAEKLI 55
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC (Nuclear distribution protein C
           homolog)
          Length = 331

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
 Frame = +1

Query: 376 NGSVGDCYTWSQMIGELDIRIKVPI-IXXXXXXXXXXXXXXHINVSYTFQNEVIPVIDKE 552
           NG+    Y W+Q + ELD+ +   +                H+ V    Q  +I   D E
Sbjct: 165 NGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAII---DGE 221

Query: 553 LSWDIKKNEVFWSFDPKENKILISVEKVQE-RWWEALFVGDVTINTRKIDCSRP-MSDLD 726
           L  ++K  E  W  +  +  + + +EK+ +  WW  L   D  INT+KI+     +SDLD
Sbjct: 222 LYNEVKVEESSWLIEDGK-VVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLD 280

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKKAWD 840
            E ++ + K+M+D RQK +GLPTSD+QK  + LKK  D
Sbjct: 281 SETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMD 318

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  EKYDNILLDVIQQ-VNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLI 200
           E++D +LL + QQ    +   ++  F FLRR+TD +         +G   G AEKLI
Sbjct: 8   ERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFF---------IGGEEGMAEKLI 55
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC (Nuclear distribution protein C
           homolog)
          Length = 341

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
 Frame = +1

Query: 376 NGSVGDCYTWSQMIGELDIRIKVPI-IXXXXXXXXXXXXXXHINVSYTFQNEVIPVIDKE 552
           NG+    Y W+Q + ELD+ I   +                 + V         PVID E
Sbjct: 175 NGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHP---PVIDGE 231

Query: 553 LSWDIKKNEVFWSFDPKENKILISVEKVQE-RWWEALFVGDVTINTRKIDCSRP-MSDLD 726
           L  ++K  E  W  +  +  + + +EK+ +  WW  L   D  INT+KI+     +SDLD
Sbjct: 232 LFNEVKVEESSWLIEDGKT-VTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLD 290

Query: 727 DEAQAKIHKLMHDNRQKQLGLPTSDQQKINDALKK 831
            E ++ + K+M+D RQK +GLPTSD+QK  D LKK
Sbjct: 291 SETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKK 325

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 33  EKYDNILLDVIQQ-VNNLPNFLDIIFGFLRRRTDLYYLMNNNQQNMGFPPGKAEKLILD 206
           +++D ILL + QQ    +   ++  F FLRR+TD +          G   G AEKLI D
Sbjct: 13  DRFDGILLAMAQQHQGGVCELVNTFFSFLRRKTDFF---------TGGEDGVAEKLITD 62
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC
          Length = 198

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
 Frame = +1

Query: 397 YTWSQMIGELDIRIKVPIIXXXXXXXXXXXXXXHINVSYTFQNEVIPVIDKELSWDIKKN 576
           Y W+Q I ++D+ I V                  I V    +N  +  ID +    IK +
Sbjct: 34  YKWTQTIRDVDVTIPVSA-NLKGRDLDVVLKKDSIKVKVKGENGEV-FIDGQFPHPIKPS 91

Query: 577 EVFWSFD----PKENKILISVEKV-QERWWEALFVGDVTINTRKIDCSRP-MSDLDDEAQ 738
           E  W+ +    P   ++ I ++KV Q  WW  +      I+  KI      +SDLD E +
Sbjct: 92  ESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETR 151

Query: 739 AKIHKLMHDNRQKQLGLPTSDQQKINDALKK 831
           A + K+M+D RQK++G PTSD+Q+  D LKK
Sbjct: 152 AMVEKMMYDQRQKEMGAPTSDEQRKMDILKK 182
>sp|P13395|SPTCA_DROME Spectrin alpha chain
          Length = 2415

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
 Frame = +1

Query: 589 SFDPKENKILISVEKVQERWWEALF-VGDVTINTR----KIDCSRPMSDLD---DEAQAK 744
           +F PKE KIL +VE +QER  + L    D  I TR    K++ SR         DE ++ 
Sbjct: 3   NFTPKEVKILETVEDIQERREQVLSRYNDFKIETRQKREKLEDSRRFQYFKRDADELESW 62

Query: 745 IHKLMHDNRQKQLGLPTSDQQKINDALKKAWDLEGSPFKGKDFDLSN 885
           IH+ +    ++    PT+ Q KI     +A++ E S        L N
Sbjct: 63  IHEKLQAASEESYRDPTNLQAKIQK--HQAFEAEVSAHSNAIVSLDN 107
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 (Nuclear GTPase 1)
          Length = 520

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
 Frame = +1

Query: 703 SRPMSDLDDEAQAKIHKLMHDNRQKQLGLPTSDQQKIND-----------ALKKAWDLEG 849
           ++ M DL++   AK  +L      K+ G+   D+  I D           A + A + EG
Sbjct: 66  AKKMKDLEERELAKQQRLEARKAAKEQGVDAMDEDMIEDDENGLAALVESAQQAAAEYEG 125

Query: 850 SPFKGKDFDLSNIDIVAYSDDF 915
           +P    D     +D++ Y+ DF
Sbjct: 126 TPSNDADVRDDELDVIDYNIDF 147
>sp|O51446|RL6_BORBU 50S ribosomal protein L6
          Length = 180

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 247 LEESVNTKPKQTEIIKDKVLNDNKSKAQESVH 342
           +++S+N K +   +I D+VLND K+KA   ++
Sbjct: 37  IKDSINVKVENGSVIVDRVLNDKKAKAYHGLY 68
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,749,176
Number of Sequences: 369166
Number of extensions: 1862533
Number of successful extensions: 5027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)