Planaria EST Database


DrC_01887

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01887
         (856 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y286|SIGL7_HUMAN  Sialic acid-binding Ig-like lectin 7 ...    30   8.5  
sp|P39734|YAC8_YEAST  Hypothetical 58.8 kDa protein in MYO4-...    30   8.5  
>sp|Q9Y286|SIGL7_HUMAN Sialic acid-binding Ig-like lectin 7 precursor (Siglec-7) (QA79
           membrane protein) (Adhesion inhibitory recptor molecule
           1) (AIRM-1) (p75) (D-siglec) (CDw328 antigen)
          Length = 467

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 607 KIKSANRYFLRMSMRVIKWVCKSVQNQKIMKTETHKPN 494
           ++  A RYF RM    IKW  K  Q    +   TH+PN
Sbjct: 114 RMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRPN 151
>sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-DRS2 intergenic region
          Length = 528

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +3

Query: 69  LSVIDSLMSTFQDALSFLNSSQRSEIDEKLRSQLCPTQSKSISKINIHITMVYMFKYIDI 248
           L  ++  M++ +D L+      R E+  K+ S L    S  ISK N+     Y  + +DI
Sbjct: 454 LQDLEKRMASCKDRLA-----SRKEVMRKMESLLSLENSLMISKKNVTFASKYRNEALDI 508

Query: 249 VFCLFRRQILVFC 287
           VF +    I+V C
Sbjct: 509 VFLII---IIVIC 518
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,282,824
Number of Sequences: 369166
Number of extensions: 1895825
Number of successful extensions: 4283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)