Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K01
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y286|SIGL7_HUMAN Sialic acid-binding Ig-like lectin 7 ... 30 8.5
sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-... 30 8.5
>sp|Q9Y286|SIGL7_HUMAN Sialic acid-binding Ig-like lectin 7 precursor (Siglec-7) (QA79
membrane protein) (Adhesion inhibitory recptor molecule
1) (AIRM-1) (p75) (D-siglec) (CDw328 antigen)
Length = 467
Score = 30.0 bits (66), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 607 KIKSANRYFLRMSMRVIKWVCKSVQNQKIMKTETHKPN 494
++ A RYF RM IKW K Q + TH+PN
Sbjct: 114 RMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRPN 151
>sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-DRS2 intergenic region
Length = 528
Score = 30.0 bits (66), Expect = 8.5
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +3
Query: 69 LSVIDSLMSTFQDALSFLNSSQRSEIDEKLRSQLCPTQSKSISKINIHITMVYMFKYIDI 248
L ++ M++ +D L+ R E+ K+ S L S ISK N+ Y + +DI
Sbjct: 454 LQDLEKRMASCKDRLA-----SRKEVMRKMESLLSLENSLMISKKNVTFASKYRNEALDI 508
Query: 249 VFCLFRRQILVFC 287
VF + I+V C
Sbjct: 509 VFLII---IIVIC 518
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,282,824
Number of Sequences: 369166
Number of extensions: 1895825
Number of successful extensions: 4283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)