Planaria EST Database


DrC_01886

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01886
         (342 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98158|LRP2_RAT  Low-density lipoprotein receptor-related...    32   0.35 
sp|Q9YHV4|FST_BRARE  Follistatin precursor (FS) (Activin-bin...    32   0.59 
sp|Q96N20|ZN75A_HUMAN  Zinc finger protein 75A                     31   1.0  
sp|O62650|FST_HORSE  Follistatin precursor (FS) (Activin-bin...    31   1.0  
sp|O94588|CUF2_SCHPO  Copper-binding regulatory protein cuf2...    30   2.3  
sp|Q90844|FST_CHICK  Follistatin precursor (FS) (Activin-bin...    30   2.3  
sp|Q03376|BAR3_CHITE  Balbiani ring protein 3 precursor            30   2.3  
sp|P19883|FST_HUMAN  Follistatin precursor (FS) (Activin-bin...    29   3.0  
sp|P21674|FST_RAT  Follistatin precursor (FS) (Activin-bindi...    29   3.0  
sp|P10669|FST_PIG  Follistatin precursor (FS) (Activin-bindi...    29   3.0  
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 precursor
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4660

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
 Frame = +2

Query: 35   CDSGYK-EIDRVCK-------GKDTVECGLK------FDRHKKDCTDKQDYFWKVCGPVY 172
            CD+G+  E+ RVC          D   CG+         R   +CTD    F+  C P Y
Sbjct: 3084 CDNGHCIEMGRVCNHVDDCSDNSDEKGCGINECLDSSISRCDHNCTDTITSFYCSCLPGY 3143

Query: 173  KTYSDE--CASAKERKEELEEISQ 238
            K  SD+  C    E KE  +  SQ
Sbjct: 3144 KLMSDKRSCVDIDECKESPQLCSQ 3167
>sp|Q9YHV4|FST_BRARE Follistatin precursor (FS) (Activin-binding protein)
          Length = 322

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
 Frame = +2

Query: 80  DTVECG----LKFDRHKKD----CTDKQDYFWK--VCGPVYKTYSDECASAKER 211
           D V+CG     K +R  K       D  +  WK  VCG   KTY DECA  K +
Sbjct: 99  DNVDCGPGKRCKMNRRSKPRCVCAPDCSNVTWKGPVCGSDGKTYRDECALLKSK 152
>sp|Q96N20|ZN75A_HUMAN Zinc finger protein 75A
          Length = 296

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 DRHKKDCTDKQDYFWKVCGPVYKTYSDECASAKERKEE 220
           DRHKKDC  ++ +  + CG  ++  SD     +   EE
Sbjct: 149 DRHKKDCAREKPFKCQECGKTFRVSSDLIKHQRIHTEE 186
>sp|O62650|FST_HORSE Follistatin precursor (FS) (Activin-binding protein)
          Length = 344

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +2

Query: 80  DTVECG--LKFDRHKKD------CTDKQDYFWK--VCGPVYKTYSDECASAKERKEELEE 229
           D V+CG   K   +KK+        D  +  WK  VCG   KTY +ECA  K R +E  E
Sbjct: 96  DNVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPE 155

Query: 230 I 232
           +
Sbjct: 156 L 156
>sp|O94588|CUF2_SCHPO Copper-binding regulatory protein cuf2 (Copper homeostasis protein)
          Length = 177

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
 Frame = -2

Query: 182 CKSCKLVHKLSRNSLVCQCNLSYVYRISNHIQQ------------CLFLYKHDRFLYNQN 39
           CK C+ + +  +++L C C+L      +N  Q+             LFL+  D+ + N +
Sbjct: 42  CKKCRAIKQQLKSNLKCVCHLQPFLPFANEYQELLNFTQKNPILASLFLFSTDKDIMNSS 101

Query: 38  RNTHRFLYIY 9
            N     Y +
Sbjct: 102 LNPASQAYTF 111
>sp|Q90844|FST_CHICK Follistatin precursor (FS) (Activin-binding protein)
          Length = 343

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +2

Query: 80  DTVECG--LKFDRHKKD------CTDKQDYFWK--VCGPVYKTYSDECASAKERKEELEE 229
           + V+CG   K   +KK+        D  +  WK  VCG   KTY +ECA  K R +E  E
Sbjct: 95  ENVDCGPGKKCKMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPE 154

Query: 230 I 232
           +
Sbjct: 155 L 155
>sp|Q03376|BAR3_CHITE Balbiani ring protein 3 precursor
          Length = 1700

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
 Frame = +2

Query: 35  CDSGYKEIDRVCK----------------GKDTVECGLKFDRHKKDCTDKQDYFWKVC 160
           CD G K  DRVC                   +T  CG   D  K  C  +Q Y WK C
Sbjct: 625 CDGGQKWNDRVCSCGCPVPRPDCTNGQIYNINTCACGCGID--KPSCPKQQIYNWKTC 680
>sp|P19883|FST_HUMAN Follistatin precursor (FS) (Activin-binding protein)
          Length = 344

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +2

Query: 80  DTVECG--LKFDRHKKD------CTDKQDYFWK--VCGPVYKTYSDECASAKERKEELEE 229
           + V+CG   K   +KK+        D  +  WK  VCG   KTY +ECA  K R +E  E
Sbjct: 96  ENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPE 155

Query: 230 I 232
           +
Sbjct: 156 L 156
>sp|P21674|FST_RAT Follistatin precursor (FS) (Activin-binding protein)
          Length = 344

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +2

Query: 80  DTVECG--LKFDRHKKD------CTDKQDYFWK--VCGPVYKTYSDECASAKERKEELEE 229
           + V+CG   K   +KK+        D  +  WK  VCG   KTY +ECA  K R +E  E
Sbjct: 96  ENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPE 155

Query: 230 I 232
           +
Sbjct: 156 L 156
>sp|P10669|FST_PIG Follistatin precursor (FS) (Activin-binding protein)
          Length = 344

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +2

Query: 80  DTVECG--LKFDRHKKD------CTDKQDYFWK--VCGPVYKTYSDECASAKERKEELEE 229
           + V+CG   K   +KK+        D  +  WK  VCG   KTY +ECA  K R +E  E
Sbjct: 96  ENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPE 155

Query: 230 I 232
           +
Sbjct: 156 L 156
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,320,946
Number of Sequences: 369166
Number of extensions: 549665
Number of successful extensions: 2000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)