Planaria EST Database


DrC_01869

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01869
         (915 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    47   1e-04
sp|P35072|TCB1_CAEBR  Transposable element Tcb1 transposase ...    45   2e-04
sp|P03934|TC1A_CAEEL  Transposable element Tc1 transposase         39   0.020
sp|Q04202|TCB2_CAEBR  Transposable element Tcb2 transposase        36   0.13 
sp|O34894|EZRA_BACSU  Septation ring formation regulator ezrA      35   0.38 
sp|P72689|IF2_SYNY3  Translation initiation factor IF-2            33   0.85 
sp|P52868|CWC23_YEAST  Pre-mRNA splicing factor CWC23 (Compl...    33   0.85 
sp|P07760|RBTR_KLEAE  Ribitol operon repressor (Rbt operon r...    32   2.5  
sp|Q9BY11|PACN1_HUMAN  Protein kinase C and casein kinase su...    31   4.2  
sp|P34257|TC3A_CAEEL  Transposable element Tc3 transposase         31   4.2  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 249 IVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDSIELIK-EISKKEFMDIPKIEFQNFLEW 73
           ++P P YSPDLAP D+ LF  L   +R  +FD  E +K E+S       P    +  +  
Sbjct: 176 VLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMML 235

Query: 72  KNRWQKCISSGEDY 31
            ++WQ+ + +  +Y
Sbjct: 236 PSKWQQVVDTNGEY 249
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
           transposase)
          Length = 273

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 28/100 (28%), Positives = 46/100 (46%)
 Frame = -1

Query: 330 SWFLHHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDS 151
           SW    DN P HT+  + + F +   N++  P+ SPDL P +  ++ +L+R L+G R  +
Sbjct: 171 SWVFQQDNDPKHTSGHVANWFRRRRVNLLEWPSQSPDLNPIEH-MWEELERRLKGVRASN 229

Query: 150 IELIKEISKKEFMDIPKIEFQNFLEWKNRWQKCISSGEDY 31
                   +  +  IP    Q  LE   R  K +   + Y
Sbjct: 230 ANQKFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGY 269
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
          Length = 273

 Score = 38.9 bits (89), Expect = 0.020
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = -1

Query: 312 DNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNR 160
           DN P HT+L +R  F +   +++  P+ SPDL P +  L+ +L+R L G R
Sbjct: 177 DNDPKHTSLHVRSWFQRRHVHLLDWPSQSPDLNPIEH-LWEELERRLGGIR 226
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
          Length = 273

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -1

Query: 330 SWFLHHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNR 160
           ++    DN P HT+  I++ F +   +++  P+ SPDL P +  L+  ++R +RG R
Sbjct: 171 AFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEH-LWEHVERHVRGVR 226
>sp|O34894|EZRA_BACSU Septation ring formation regulator ezrA
          Length = 562

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
 Frame = -1

Query: 864 KLSTDKEHVKQIKELVMKNRRLTVRDLADVVGI-----SVGSVNTIIKDILCLRRVKFRL 700
           KL  +KEH K   ELV ++ RLT  +L            +G + + +KD L    V + L
Sbjct: 320 KLKEEKEHTKAETELVKESYRLTAGELGKQQAFEKRLDEIGKLLSSVKDKLDAEHVAYSL 379

Query: 699 VPKTLNFLEKQHRVEVCVTMLSDYHEMMKCI 607
           + + +  +EKQ  +E      ++Y E ++ +
Sbjct: 380 LVEEVASIEKQ--IEEVKKEHAEYRENLQAL 408
>sp|P72689|IF2_SYNY3 Translation initiation factor IF-2
          Length = 1001

 Score = 33.5 bits (75), Expect = 0.85
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 852 DKEHVKQIKELVMKNRRLTVRDLADVVGIS 763
           D++ V Q  E++M +R LTVRDLAD++ IS
Sbjct: 401 DRKEVVQKPEVIMLDRSLTVRDLADLLKIS 430
>sp|P52868|CWC23_YEAST Pre-mRNA splicing factor CWC23 (Complexed with CEF1 protein 23)
          Length = 283

 Score = 33.5 bits (75), Expect = 0.85
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -1

Query: 318 HHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDSIELI 139
           H D  P + ++I + H   T+TNI+      P     D WL   L++T   N  +  +LI
Sbjct: 50  HPDKHPDNPSIIHKFHLLSTATNILTNADVRPHY---DRWLIEFLRKT---NDIERNKLI 103

Query: 138 KEISKKEFMDIP 103
           +++ + E   IP
Sbjct: 104 QKLEESESSTIP 115
>sp|P07760|RBTR_KLEAE Ribitol operon repressor (Rbt operon repressor)
          Length = 270

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 807 RRLTVRDLADVVGISVGSVNTIIKDILCLRRVKFRLVPKTLNFLEKQ 667
           +++T+ DLA++ G+S  +V+ I+      RR+  +L  K     E+Q
Sbjct: 2   KKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQ 48
>sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase substrate in neurons protein 1
          Length = 444

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 240 QPTYSPDLAPCDFWLFSKLKRTLR----GNRF--DSIELIKEISKKEFMDIPKIEFQNFL 79
           + + +P+     FW     KRT++    G+R   D +  ++E +K     I K   Q   
Sbjct: 7   EASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAK-----IEKAYGQQLT 61

Query: 78  EWKNRWQKCISSGEDY 31
           +W  RW++ I  G  Y
Sbjct: 62  DWAKRWRQLIEKGPQY 77
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
          Length = 329

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 312 DNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCD 205
           DNA  H +   RD+F     N++  P  SPDL P +
Sbjct: 231 DNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE 266
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,955,662
Number of Sequences: 369166
Number of extensions: 1946598
Number of successful extensions: 5507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5507
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)