Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_G10
(915 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 47 1e-04
sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase ... 45 2e-04
sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase 39 0.020
sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase 36 0.13
sp|O34894|EZRA_BACSU Septation ring formation regulator ezrA 35 0.38
sp|P72689|IF2_SYNY3 Translation initiation factor IF-2 33 0.85
sp|P52868|CWC23_YEAST Pre-mRNA splicing factor CWC23 (Compl... 33 0.85
sp|P07760|RBTR_KLEAE Ribitol operon repressor (Rbt operon r... 32 2.5
sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase su... 31 4.2
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 31 4.2
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 46.6 bits (109), Expect = 1e-04
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -1
Query: 249 IVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDSIELIK-EISKKEFMDIPKIEFQNFLEW 73
++P P YSPDLAP D+ LF L +R +FD E +K E+S P + +
Sbjct: 176 VLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMML 235
Query: 72 KNRWQKCISSGEDY 31
++WQ+ + + +Y
Sbjct: 236 PSKWQQVVDTNGEY 249
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
transposase)
Length = 273
Score = 45.4 bits (106), Expect = 2e-04
Identities = 28/100 (28%), Positives = 46/100 (46%)
Frame = -1
Query: 330 SWFLHHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDS 151
SW DN P HT+ + + F + N++ P+ SPDL P + ++ +L+R L+G R +
Sbjct: 171 SWVFQQDNDPKHTSGHVANWFRRRRVNLLEWPSQSPDLNPIEH-MWEELERRLKGVRASN 229
Query: 150 IELIKEISKKEFMDIPKIEFQNFLEWKNRWQKCISSGEDY 31
+ + IP Q LE R K + + Y
Sbjct: 230 ANQKFAQLEAAWKSIPMTVVQTLLESMPRRCKAVIDAKGY 269
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
Length = 273
Score = 38.9 bits (89), Expect = 0.020
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = -1
Query: 312 DNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNR 160
DN P HT+L +R F + +++ P+ SPDL P + L+ +L+R L G R
Sbjct: 177 DNDPKHTSLHVRSWFQRRHVHLLDWPSQSPDLNPIEH-LWEELERRLGGIR 226
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
Length = 273
Score = 36.2 bits (82), Expect = 0.13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -1
Query: 330 SWFLHHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNR 160
++ DN P HT+ I++ F + +++ P+ SPDL P + L+ ++R +RG R
Sbjct: 171 AFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEH-LWEHVERHVRGVR 226
>sp|O34894|EZRA_BACSU Septation ring formation regulator ezrA
Length = 562
Score = 34.7 bits (78), Expect = 0.38
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = -1
Query: 864 KLSTDKEHVKQIKELVMKNRRLTVRDLADVVGI-----SVGSVNTIIKDILCLRRVKFRL 700
KL +KEH K ELV ++ RLT +L +G + + +KD L V + L
Sbjct: 320 KLKEEKEHTKAETELVKESYRLTAGELGKQQAFEKRLDEIGKLLSSVKDKLDAEHVAYSL 379
Query: 699 VPKTLNFLEKQHRVEVCVTMLSDYHEMMKCI 607
+ + + +EKQ +E ++Y E ++ +
Sbjct: 380 LVEEVASIEKQ--IEEVKKEHAEYRENLQAL 408
>sp|P72689|IF2_SYNY3 Translation initiation factor IF-2
Length = 1001
Score = 33.5 bits (75), Expect = 0.85
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -1
Query: 852 DKEHVKQIKELVMKNRRLTVRDLADVVGIS 763
D++ V Q E++M +R LTVRDLAD++ IS
Sbjct: 401 DRKEVVQKPEVIMLDRSLTVRDLADLLKIS 430
>sp|P52868|CWC23_YEAST Pre-mRNA splicing factor CWC23 (Complexed with CEF1 protein 23)
Length = 283
Score = 33.5 bits (75), Expect = 0.85
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -1
Query: 318 HHDNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCDFWLFSKLKRTLRGNRFDSIELI 139
H D P + ++I + H T+TNI+ P D WL L++T N + +LI
Sbjct: 50 HPDKHPDNPSIIHKFHLLSTATNILTNADVRPHY---DRWLIEFLRKT---NDIERNKLI 103
Query: 138 KEISKKEFMDIP 103
+++ + E IP
Sbjct: 104 QKLEESESSTIP 115
>sp|P07760|RBTR_KLEAE Ribitol operon repressor (Rbt operon repressor)
Length = 270
Score = 32.0 bits (71), Expect = 2.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 807 RRLTVRDLADVVGISVGSVNTIIKDILCLRRVKFRLVPKTLNFLEKQ 667
+++T+ DLA++ G+S +V+ I+ RR+ +L K E+Q
Sbjct: 2 KKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQ 48
>sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase substrate in neurons protein 1
Length = 444
Score = 31.2 bits (69), Expect = 4.2
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = -1
Query: 240 QPTYSPDLAPCDFWLFSKLKRTLR----GNRF--DSIELIKEISKKEFMDIPKIEFQNFL 79
+ + +P+ FW KRT++ G+R D + ++E +K I K Q
Sbjct: 7 EASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAK-----IEKAYGQQLT 61
Query: 78 EWKNRWQKCISSGEDY 31
+W RW++ I G Y
Sbjct: 62 DWAKRWRQLIEKGPQY 77
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 31.2 bits (69), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 312 DNAPAHTALIIRDHFAKTSTNIVPQPTYSPDLAPCD 205
DNA H + RD+F N++ P SPDL P +
Sbjct: 231 DNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,955,662
Number of Sequences: 369166
Number of extensions: 1946598
Number of successful extensions: 5507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5507
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)