Planaria EST Database


DrC_01863

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01863
         (471 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ER64|OSR5_MOUSE  Oxysterol binding protein-related prot...    31   1.6  
sp|Q9BZF1|OSR8_HUMAN  Oxysterol binding protein-related prot...    30   2.8  
sp|Q8Z3T9|MLTC_SALTI  Membrane-bound lytic murein transglyco...    30   3.6  
sp|Q9DF50|CLSPN_XENLA  Claspin (xClaspin)                          29   4.7  
sp|Q8ZM39|MLTC_SALTY  Membrane-bound lytic murein transglyco...    29   4.7  
sp|Q57K03|MLTC_SALCH  Membrane-bound lytic murein transglyco...    29   4.7  
sp|Q6D8K0|MLTC_ERWCT  Membrane-bound lytic murein transglyco...    29   6.2  
sp|Q9I507|RBN_PSEAE  tRNA-processing ribonuclease BN (RNase BN)    29   6.2  
>sp|Q9ER64|OSR5_MOUSE Oxysterol binding protein-related protein 5 (OSBP-related protein
           5) (ORP-5) (Oxystyrol-binding protein homologue 1)
          Length = 874

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
 Frame = +3

Query: 27  SSVIFKGKSSFIMNNKRIYGPTFPISETSEPCDDVYTNVTEADIKQYKEDISICQTVGPL 206
           +S     +  F +N   +    F      E  +D      +   K  +    +  + G  
Sbjct: 277 TSATIPDQDLFPLNGSALENDAFSDKSERENAEDSDAETQDHSRKTNESGSDLLDSPGGP 336

Query: 207 LPGCEILEEMRHQK---DANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDS 377
             G   +E+++ +    D   +VET+++++   +W+        +D+++ + P  F+++ 
Sbjct: 337 WRGTTYVEQVQEELGELDETSQVETVSEENKSLMWVLLRQLRPGMDLSRVVLPT-FVLEP 395

Query: 378 RNYLDNLESY 407
           R++L  L  Y
Sbjct: 396 RSFLGKLSDY 405
>sp|Q9BZF1|OSR8_HUMAN Oxysterol binding protein-related protein 8 (OSBP-related protein
           8) (ORP-8)
          Length = 889

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = +3

Query: 228 EEMRHQKDANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDSRNYLDNLESY 407
           EE+    +A+ + ET+++++   IW         +D++K + P  FI++ R++LD L  Y
Sbjct: 385 EELGEAGEAS-QTETVSEENKSLIWTLLKQVRPGMDLSKVVLPT-FILEPRSFLDKLSDY 442
>sp|Q8Z3T9|MLTC_SALTI Membrane-bound lytic murein transglycosylase C precursor (Murein
           hydrolase C)
          Length = 360

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
           G  Y + L+  +L  I NP   R   I+ ++GG  SV++I   D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRIFSND 314
>sp|Q9DF50|CLSPN_XENLA Claspin (xClaspin)
          Length = 1285

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 210 PGCEILEEMRHQKDANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDSRNYL 389
           PG E  EE+   +D NDE +T+  +  GN+    +  P  +  + SL    F  +S    
Sbjct: 633 PGGEDEEEVGDAEDDNDEDDTVNDRLLGNVPEIVIPLPRPVTTDSSLML--FKDNSSKLG 690

Query: 390 DNLESYQAPKRDNR-----ESLMDIYKRN 461
           D+L      KR +R     +SL+   K N
Sbjct: 691 DSLPDESGCKRSSRLEYEEDSLLPQLKEN 719
>sp|Q8ZM39|MLTC_SALTY Membrane-bound lytic murein transglycosylase C precursor (Murein
           hydrolase C)
 sp|Q5PMM0|MLTC_SALPA Membrane-bound lytic murein transglycosylase C precursor (Murein
           hydrolase C)
          Length = 360

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
           G  Y + L+  +L  I NP   R   I+ ++GG  SV+++   D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSND 314
>sp|Q57K03|MLTC_SALCH Membrane-bound lytic murein transglycosylase C precursor (Murein
           hydrolase C)
          Length = 360

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
           G  Y + L+  +L  I NP   R   I+ ++GG  SV+++   D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSND 314
>sp|Q6D8K0|MLTC_ERWCT Membrane-bound lytic murein transglycosylase C precursor (Murein
           hydrolase C)
          Length = 357

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
           G  Y S L   +L  I NP   R   I+ ++GG  SV+++   D
Sbjct: 269 GTAYLSILKNSYLAGIENPTSKRYAVITAYNGGAGSVLRVFSSD 312
>sp|Q9I507|RBN_PSEAE tRNA-processing ribonuclease BN (RNase BN)
          Length = 411

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 434 FPIIPFWSLIRFQIVQIIPGIHNESSGFKTFIYINF 327
           F ++P  +++ F ++ +IP  H      +TFI+ NF
Sbjct: 37  FAVVPMMTVM-FSMLSLIPAFHGMGESIQTFIFRNF 71
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,850,706
Number of Sequences: 369166
Number of extensions: 941204
Number of successful extensions: 2533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2533
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)