Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F07
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ER64|OSR5_MOUSE Oxysterol binding protein-related prot... 31 1.6
sp|Q9BZF1|OSR8_HUMAN Oxysterol binding protein-related prot... 30 2.8
sp|Q8Z3T9|MLTC_SALTI Membrane-bound lytic murein transglyco... 30 3.6
sp|Q9DF50|CLSPN_XENLA Claspin (xClaspin) 29 4.7
sp|Q8ZM39|MLTC_SALTY Membrane-bound lytic murein transglyco... 29 4.7
sp|Q57K03|MLTC_SALCH Membrane-bound lytic murein transglyco... 29 4.7
sp|Q6D8K0|MLTC_ERWCT Membrane-bound lytic murein transglyco... 29 6.2
sp|Q9I507|RBN_PSEAE tRNA-processing ribonuclease BN (RNase BN) 29 6.2
>sp|Q9ER64|OSR5_MOUSE Oxysterol binding protein-related protein 5 (OSBP-related protein
5) (ORP-5) (Oxystyrol-binding protein homologue 1)
Length = 874
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Frame = +3
Query: 27 SSVIFKGKSSFIMNNKRIYGPTFPISETSEPCDDVYTNVTEADIKQYKEDISICQTVGPL 206
+S + F +N + F E +D + K + + + G
Sbjct: 277 TSATIPDQDLFPLNGSALENDAFSDKSERENAEDSDAETQDHSRKTNESGSDLLDSPGGP 336
Query: 207 LPGCEILEEMRHQK---DANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDS 377
G +E+++ + D +VET+++++ +W+ +D+++ + P F+++
Sbjct: 337 WRGTTYVEQVQEELGELDETSQVETVSEENKSLMWVLLRQLRPGMDLSRVVLPT-FVLEP 395
Query: 378 RNYLDNLESY 407
R++L L Y
Sbjct: 396 RSFLGKLSDY 405
>sp|Q9BZF1|OSR8_HUMAN Oxysterol binding protein-related protein 8 (OSBP-related protein
8) (ORP-8)
Length = 889
Score = 30.0 bits (66), Expect = 2.8
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +3
Query: 228 EEMRHQKDANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDSRNYLDNLESY 407
EE+ +A+ + ET+++++ IW +D++K + P FI++ R++LD L Y
Sbjct: 385 EELGEAGEAS-QTETVSEENKSLIWTLLKQVRPGMDLSKVVLPT-FILEPRSFLDKLSDY 442
>sp|Q8Z3T9|MLTC_SALTI Membrane-bound lytic murein transglycosylase C precursor (Murein
hydrolase C)
Length = 360
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
G Y + L+ +L I NP R I+ ++GG SV++I D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRIFSND 314
>sp|Q9DF50|CLSPN_XENLA Claspin (xClaspin)
Length = 1285
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +3
Query: 210 PGCEILEEMRHQKDANDEVETITKKSSGNIWMTELLPPSKIDINKSLKPRGFIMDSRNYL 389
PG E EE+ +D NDE +T+ + GN+ + P + + SL F +S
Sbjct: 633 PGGEDEEEVGDAEDDNDEDDTVNDRLLGNVPEIVIPLPRPVTTDSSLML--FKDNSSKLG 690
Query: 390 DNLESYQAPKRDNR-----ESLMDIYKRN 461
D+L KR +R +SL+ K N
Sbjct: 691 DSLPDESGCKRSSRLEYEEDSLLPQLKEN 719
>sp|Q8ZM39|MLTC_SALTY Membrane-bound lytic murein transglycosylase C precursor (Murein
hydrolase C)
sp|Q5PMM0|MLTC_SALPA Membrane-bound lytic murein transglycosylase C precursor (Murein
hydrolase C)
Length = 360
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
G Y + L+ +L I NP R I+ ++GG SV+++ D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSND 314
>sp|Q57K03|MLTC_SALCH Membrane-bound lytic murein transglycosylase C precursor (Murein
hydrolase C)
Length = 360
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
G Y + L+ +L I NP R I+ ++GG SV+++ D
Sbjct: 271 GTAYLAMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSND 314
>sp|Q6D8K0|MLTC_ERWCT Membrane-bound lytic murein transglycosylase C precursor (Murein
hydrolase C)
Length = 357
Score = 28.9 bits (63), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 415 GA*YDSKLSK*FLESIMNPLGLRLLFISIFDGGNNSVIQILPED 284
G Y S L +L I NP R I+ ++GG SV+++ D
Sbjct: 269 GTAYLSILKNSYLAGIENPTSKRYAVITAYNGGAGSVLRVFSSD 312
>sp|Q9I507|RBN_PSEAE tRNA-processing ribonuclease BN (RNase BN)
Length = 411
Score = 28.9 bits (63), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 434 FPIIPFWSLIRFQIVQIIPGIHNESSGFKTFIYINF 327
F ++P +++ F ++ +IP H +TFI+ NF
Sbjct: 37 FAVVPMMTVM-FSMLSLIPAFHGMGESIQTFIFRNF 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,850,706
Number of Sequences: 369166
Number of extensions: 941204
Number of successful extensions: 2533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2533
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)