Planaria EST Database


DrC_01855

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01855
         (942 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22216|RAD53_YEAST  Serine/threonine-protein kinase RAD53...    44   9e-04
sp|P08092|RAN1_SCHPO  Negative regulator of sexual conjugati...    42   0.003
sp|P41892|CDC7_SCHPO  Cell division control protein 7              35   0.23 
sp|Q00526|CDK3_HUMAN  Cell division protein kinase 3               35   0.23 
sp|Q9WV60|GSK3B_MOUSE  Glycogen synthase kinase-3 beta (GSK-...    35   0.31 
sp|P49841|GSK3B_HUMAN  Glycogen synthase kinase-3 beta (GSK-...    35   0.31 
sp|P18266|GSK3B_RAT  Glycogen synthase kinase-3 beta (GSK-3 ...    35   0.31 
sp|Q56826|FLIC_XENNE  Flagellin                                    35   0.40 
sp|Q8XJE1|DXS_CLOPE  1-deoxy-D-xylulose-5-phosphate synthase...    35   0.40 
sp|Q9HGY5|PHO85_CANAL  Negative regulator of the PHO system ...    35   0.40 
>sp|P22216|RAD53_YEAST Serine/threonine-protein kinase RAD53 (Serine-protein kinase 1)
          Length = 821

 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
 Frame = +3

Query: 426 VDNDEIIAIIQEDGKLLLYPILEQGEPLYICYSNDEKIEDIKHRIADN---------LQC 578
           + N     ++ EDG LLL  I   G  L     N +K+E   +++            ++ 
Sbjct: 84  LSNKHFQILLGEDGNLLLNDISTNGTWL-----NGQKVEKNSNQLLSQGDEITVGVGVES 138

Query: 579 EVNEFILFYE---YDILDENKYV-YECSIINQSAIKYCYFKKTSEFKQLGDKIAA-GEYS 743
           ++   ++F        L++NK      ++ N S I       ++    + +K     ++S
Sbjct: 139 DILSLVIFINDKFKQCLEQNKVDRIRSNLKNTSKIASPGLTSSTASSMVANKTGIFKDFS 198

Query: 744 IVYKAEIVRTGAFITLKKY----NCKAISMNLESHKLLI-------RELISFNRLDSHAR 890
           I+   E+V  GAF T+KK       K  ++ + S + +I       REL    +L+ H R
Sbjct: 199 II--DEVVGQGAFATVKKAIERTTGKTFAVKIISKRKVIGNMDGVTRELEVLQKLN-HPR 255

Query: 891 IVRLRAFYKDNESFYI 938
           IVRL+ FY+D ES+Y+
Sbjct: 256 IVRLKGFYEDTESYYM 271
>sp|P08092|RAN1_SCHPO Negative regulator of sexual conjugation and meiosis
          Length = 470

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = +3

Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
           I AG Y +VYKAE +  G    +K   CK   +N +  KL  REL    R+ SH  I+ L
Sbjct: 24  IGAGAYGVVYKAEDIYDGTLYAVKAL-CKD-GLNEKQKKLQARELALHARVSSHPYIITL 81

Query: 903 RAFYKDNESFYI 938
               +  ++ Y+
Sbjct: 82  HRVLETEDAIYV 93
>sp|P41892|CDC7_SCHPO Cell division control protein 7
          Length = 1062

 Score = 35.4 bits (80), Expect = 0.23
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +3

Query: 711 LGDKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHAR 890
           LGD +  G +  VY+   ++ G  + +KK     +S  L+S   +I+  I   +   H  
Sbjct: 11  LGDCLGKGAFGAVYRGLNIKNGETVAVKKVK---LSKMLKSDLSVIKMEIDLLKNLDHPN 67

Query: 891 IVRLRAFYKDNESFYI 938
           IV+ R  Y+ N+S  I
Sbjct: 68  IVKYRGSYQTNDSLCI 83
>sp|Q00526|CDK3_HUMAN Cell division protein kinase 3
          Length = 305

 Score = 35.4 bits (80), Expect = 0.23
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 717 DKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESH---KLLIRELISFNRLDSHA 887
           +KI  G Y +VYKA+   TG  + LKK     I ++LE        IRE+     L  H 
Sbjct: 8   EKIGEGTYGVVYKAKNRETGQLVALKK-----IRLDLEMEGVPSTAIREISLLKEL-KHP 61

Query: 888 RIVRLRAFYKDNESFYI 938
            IVRL     +    Y+
Sbjct: 62  NIVRLLDVVHNERKLYL 78
>sp|Q9WV60|GSK3B_MOUSE Glycogen synthase kinase-3 beta (GSK-3 beta)
          Length = 420

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
           I  G + +VY+A++  +G  + +KK         L+  +   REL    +LD H  IVRL
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112

Query: 903 RAFY 914
           R F+
Sbjct: 113 RYFF 116
>sp|P49841|GSK3B_HUMAN Glycogen synthase kinase-3 beta (GSK-3 beta)
          Length = 420

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
           I  G + +VY+A++  +G  + +KK         L+  +   REL    +LD H  IVRL
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112

Query: 903 RAFY 914
           R F+
Sbjct: 113 RYFF 116
>sp|P18266|GSK3B_RAT Glycogen synthase kinase-3 beta (GSK-3 beta) (Factor A) (FA)
          Length = 420

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
           I  G + +VY+A++  +G  + +KK         L+  +   REL    +LD H  IVRL
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112

Query: 903 RAFY 914
           R F+
Sbjct: 113 RYFF 116
>sp|Q56826|FLIC_XENNE Flagellin
          Length = 313

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
 Frame = +3

Query: 6   IIKTDDGEVLFRENVLKNDNLI-SIRKKITENLWPHEMID---AKRIVFKQNDNILDLNR 173
           +I T+D  +L + N+ K+  ++ S  ++++  L  +   D    + I  +   N+  L +
Sbjct: 4   VINTNDSALLAQNNLTKSKGILGSAIERLSSGLRINSAKDDAAGQAIANRFTANVKGLTQ 63

Query: 174 PLYNLVDKSEIVCT-------INDNIN-LRSLIVIHIKQNISKNDLVSVQLEDTQLISQL 329
              N  D   I  T       IN+N+  +R L V     + SK+DL S+Q E TQ + ++
Sbjct: 64  AARNANDGISIAQTTEGALNEINNNLQRIRELTVQSENGSNSKSDLDSIQKEVTQRLEEI 123

Query: 330 KDVIYQV--SGLNVMDLYKNKIRLQEG 404
             +  Q   +G+ V++    ++++Q G
Sbjct: 124 DRISTQTQFNGIKVLNGDVTEMKIQVG 150
>sp|Q8XJE1|DXS_CLOPE 1-deoxy-D-xylulose-5-phosphate synthase
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 619

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
 Frame = +3

Query: 90  TENLWPHEMIDAKRIVFKQNDNILDLNRPLYNLVDKSEI---------VCTINDNINLRS 242
           T  +  H MI A++I  ++N +IL +N      +DK  +         + TI DNI    
Sbjct: 505 TGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGG 564

Query: 243 L---IVIHIKQNISKNDLVSVQLEDTQLISQLKDVIYQVSGLNVMDLYKNKIRL 395
               ++ ++ +   K  +V++   D  +     D++Y+++GL+   +    I L
Sbjct: 565 FGEGVLEYLNEIGHKEKIVTLAFNDKFIEHGKPDILYKINGLDAEGIKNTLIEL 618
>sp|Q9HGY5|PHO85_CANAL Negative regulator of the PHO system (Serine/threonine-protein
           kinase PHO85) (CaPHO85)
          Length = 326

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 693 TSEFKQLGDKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLE--SHKLLIRELISF 866
           +S+F+QL +K+  G Y+ VYK     TGA + LK+     IS++ E  +    IRE+   
Sbjct: 5   SSQFQQL-EKLGEGTYATVYKGRNRATGALVALKE-----ISLDSEEGTPSTAIREISLM 58

Query: 867 NRLDSHARIVRL 902
             LD H  IV L
Sbjct: 59  KELD-HENIVTL 69
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,932,457
Number of Sequences: 369166
Number of extensions: 1807708
Number of successful extensions: 5412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5410
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)