Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D09
(942 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22216|RAD53_YEAST Serine/threonine-protein kinase RAD53... 44 9e-04
sp|P08092|RAN1_SCHPO Negative regulator of sexual conjugati... 42 0.003
sp|P41892|CDC7_SCHPO Cell division control protein 7 35 0.23
sp|Q00526|CDK3_HUMAN Cell division protein kinase 3 35 0.23
sp|Q9WV60|GSK3B_MOUSE Glycogen synthase kinase-3 beta (GSK-... 35 0.31
sp|P49841|GSK3B_HUMAN Glycogen synthase kinase-3 beta (GSK-... 35 0.31
sp|P18266|GSK3B_RAT Glycogen synthase kinase-3 beta (GSK-3 ... 35 0.31
sp|Q56826|FLIC_XENNE Flagellin 35 0.40
sp|Q8XJE1|DXS_CLOPE 1-deoxy-D-xylulose-5-phosphate synthase... 35 0.40
sp|Q9HGY5|PHO85_CANAL Negative regulator of the PHO system ... 35 0.40
>sp|P22216|RAD53_YEAST Serine/threonine-protein kinase RAD53 (Serine-protein kinase 1)
Length = 821
Score = 43.5 bits (101), Expect = 9e-04
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Frame = +3
Query: 426 VDNDEIIAIIQEDGKLLLYPILEQGEPLYICYSNDEKIEDIKHRIADN---------LQC 578
+ N ++ EDG LLL I G L N +K+E +++ ++
Sbjct: 84 LSNKHFQILLGEDGNLLLNDISTNGTWL-----NGQKVEKNSNQLLSQGDEITVGVGVES 138
Query: 579 EVNEFILFYE---YDILDENKYV-YECSIINQSAIKYCYFKKTSEFKQLGDKIAA-GEYS 743
++ ++F L++NK ++ N S I ++ + +K ++S
Sbjct: 139 DILSLVIFINDKFKQCLEQNKVDRIRSNLKNTSKIASPGLTSSTASSMVANKTGIFKDFS 198
Query: 744 IVYKAEIVRTGAFITLKKY----NCKAISMNLESHKLLI-------RELISFNRLDSHAR 890
I+ E+V GAF T+KK K ++ + S + +I REL +L+ H R
Sbjct: 199 II--DEVVGQGAFATVKKAIERTTGKTFAVKIISKRKVIGNMDGVTRELEVLQKLN-HPR 255
Query: 891 IVRLRAFYKDNESFYI 938
IVRL+ FY+D ES+Y+
Sbjct: 256 IVRLKGFYEDTESYYM 271
>sp|P08092|RAN1_SCHPO Negative regulator of sexual conjugation and meiosis
Length = 470
Score = 41.6 bits (96), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +3
Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
I AG Y +VYKAE + G +K CK +N + KL REL R+ SH I+ L
Sbjct: 24 IGAGAYGVVYKAEDIYDGTLYAVKAL-CKD-GLNEKQKKLQARELALHARVSSHPYIITL 81
Query: 903 RAFYKDNESFYI 938
+ ++ Y+
Sbjct: 82 HRVLETEDAIYV 93
>sp|P41892|CDC7_SCHPO Cell division control protein 7
Length = 1062
Score = 35.4 bits (80), Expect = 0.23
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 711 LGDKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHAR 890
LGD + G + VY+ ++ G + +KK +S L+S +I+ I + H
Sbjct: 11 LGDCLGKGAFGAVYRGLNIKNGETVAVKKVK---LSKMLKSDLSVIKMEIDLLKNLDHPN 67
Query: 891 IVRLRAFYKDNESFYI 938
IV+ R Y+ N+S I
Sbjct: 68 IVKYRGSYQTNDSLCI 83
>sp|Q00526|CDK3_HUMAN Cell division protein kinase 3
Length = 305
Score = 35.4 bits (80), Expect = 0.23
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 717 DKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESH---KLLIRELISFNRLDSHA 887
+KI G Y +VYKA+ TG + LKK I ++LE IRE+ L H
Sbjct: 8 EKIGEGTYGVVYKAKNRETGQLVALKK-----IRLDLEMEGVPSTAIREISLLKEL-KHP 61
Query: 888 RIVRLRAFYKDNESFYI 938
IVRL + Y+
Sbjct: 62 NIVRLLDVVHNERKLYL 78
>sp|Q9WV60|GSK3B_MOUSE Glycogen synthase kinase-3 beta (GSK-3 beta)
Length = 420
Score = 35.0 bits (79), Expect = 0.31
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
I G + +VY+A++ +G + +KK L+ + REL +LD H IVRL
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112
Query: 903 RAFY 914
R F+
Sbjct: 113 RYFF 116
>sp|P49841|GSK3B_HUMAN Glycogen synthase kinase-3 beta (GSK-3 beta)
Length = 420
Score = 35.0 bits (79), Expect = 0.31
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
I G + +VY+A++ +G + +KK L+ + REL +LD H IVRL
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112
Query: 903 RAFY 914
R F+
Sbjct: 113 RYFF 116
>sp|P18266|GSK3B_RAT Glycogen synthase kinase-3 beta (GSK-3 beta) (Factor A) (FA)
Length = 420
Score = 35.0 bits (79), Expect = 0.31
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 723 IAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLESHKLLIRELISFNRLDSHARIVRL 902
I G + +VY+A++ +G + +KK L+ + REL +LD H IVRL
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLD-HCNIVRL 112
Query: 903 RAFY 914
R F+
Sbjct: 113 RYFF 116
>sp|Q56826|FLIC_XENNE Flagellin
Length = 313
Score = 34.7 bits (78), Expect = 0.40
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Frame = +3
Query: 6 IIKTDDGEVLFRENVLKNDNLI-SIRKKITENLWPHEMID---AKRIVFKQNDNILDLNR 173
+I T+D +L + N+ K+ ++ S ++++ L + D + I + N+ L +
Sbjct: 4 VINTNDSALLAQNNLTKSKGILGSAIERLSSGLRINSAKDDAAGQAIANRFTANVKGLTQ 63
Query: 174 PLYNLVDKSEIVCT-------INDNIN-LRSLIVIHIKQNISKNDLVSVQLEDTQLISQL 329
N D I T IN+N+ +R L V + SK+DL S+Q E TQ + ++
Sbjct: 64 AARNANDGISIAQTTEGALNEINNNLQRIRELTVQSENGSNSKSDLDSIQKEVTQRLEEI 123
Query: 330 KDVIYQV--SGLNVMDLYKNKIRLQEG 404
+ Q +G+ V++ ++++Q G
Sbjct: 124 DRISTQTQFNGIKVLNGDVTEMKIQVG 150
>sp|Q8XJE1|DXS_CLOPE 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 619
Score = 34.7 bits (78), Expect = 0.40
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Frame = +3
Query: 90 TENLWPHEMIDAKRIVFKQNDNILDLNRPLYNLVDKSEI---------VCTINDNINLRS 242
T + H MI A++I ++N +IL +N +DK + + TI DNI
Sbjct: 505 TGKMVQHAMIAAQKIKEEKNIDILIINATFIKPIDKELLNSLSKDGFKIVTIEDNIKKGG 564
Query: 243 L---IVIHIKQNISKNDLVSVQLEDTQLISQLKDVIYQVSGLNVMDLYKNKIRL 395
++ ++ + K +V++ D + D++Y+++GL+ + I L
Sbjct: 565 FGEGVLEYLNEIGHKEKIVTLAFNDKFIEHGKPDILYKINGLDAEGIKNTLIEL 618
>sp|Q9HGY5|PHO85_CANAL Negative regulator of the PHO system (Serine/threonine-protein
kinase PHO85) (CaPHO85)
Length = 326
Score = 34.7 bits (78), Expect = 0.40
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 693 TSEFKQLGDKIAAGEYSIVYKAEIVRTGAFITLKKYNCKAISMNLE--SHKLLIRELISF 866
+S+F+QL +K+ G Y+ VYK TGA + LK+ IS++ E + IRE+
Sbjct: 5 SSQFQQL-EKLGEGTYATVYKGRNRATGALVALKE-----ISLDSEEGTPSTAIREISLM 58
Query: 867 NRLDSHARIVRL 902
LD H IV L
Sbjct: 59 KELD-HENIVTL 69
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,932,457
Number of Sequences: 369166
Number of extensions: 1807708
Number of successful extensions: 5412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5410
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)