Planaria EST Database


DrC_01850

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01850
         (883 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PPP0|SYE_UREPA  Glutamyl-tRNA synthetase (Glutamate--tR...    39   0.025
sp|P28741|KIF3A_MOUSE  Kinesin-like protein KIF3A (Microtubu...    34   0.62 
sp|Q9Y496|KIF3A_HUMAN  Kinesin-like protein KIF3A (Microtubu...    34   0.62 
sp|P81412|DP2S_PYRFU  DNA polymerase II small subunit (Pol I...    33   0.80 
sp|P14732|LAM2_CHICK  Lamin B2                                     32   1.8  
sp|O51604|ERA_BORBU  GTP-binding protein era homolog               32   1.8  
sp|P25357|SNT1_YEAST  Probable DNA-binding protein SNT1            32   2.3  
sp|Q8K985|MDLA_BUCAP  Multidrug resistance-like ATP-binding ...    32   2.3  
sp|Q8N3U4|STAG2_HUMAN  Cohesin subunit SA-2 (Stromal antigen...    32   3.1  
sp|Q58969|Y1574_METJA  Putative ATP-dependent helicase MJ1574      31   4.0  
>sp|Q9PPP0|SYE_UREPA Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
          Length = 482

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
 Frame = +3

Query: 240 KHDMLKLVPLPSHDYPIHNKEILFKITKERLNLKLDFFGIQFLYDEEVEAEDIENDKKEQ 419
           KH + K + L  +DY   NK +LFK     L   +D    QF  D++V A D++  KK Q
Sbjct: 343 KHSLTKELVL--NDYTFINKCLLFKSHIINLKQLIDLVIEQFNCDKKVLASDVDYIKKNQ 400

Query: 420 KRNSARLYIE-IYDNDGKMKQFYKSPIIQKKDLDPLAQKSVVGNKG--IYSNRKITSSSN 590
                R++ E +  ND   ++F K  II+K  +       +  NKG  +Y   +I ++ +
Sbjct: 401 LITVVRVFYEQLIINDEFNEEFIKE-IIKKVQI-------ITNNKGANLYMPIRIATTFS 452

Query: 591 MH 596
            H
Sbjct: 453 SH 454
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
           motor 3A)
          Length = 701

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 357 IQFLYDEEVEAEDIENDKKEQKRNSARLYIEIYDNDGKMKQFYKSPIIQKKDLDPLAQKS 536
           +Q   DEE +A + + D +E++RN AR  +E  + D    Q     +++K  L  L +K 
Sbjct: 424 MQAKIDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEK--LSALEKKV 481

Query: 537 VVGNKGIYS----NRKITSSSNMHL 599
           +VG   + +      K+   SNM L
Sbjct: 482 IVGGVDLLAKAEEQEKLLEESNMEL 506
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
           motor 3A)
          Length = 702

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 357 IQFLYDEEVEAEDIENDKKEQKRNSARLYIEIYDNDGKMKQFYKSPIIQKKDLDPLAQKS 536
           +Q   DEE +A + + D +E++RN AR  +E  + D    Q     +++K  L  L +K 
Sbjct: 425 MQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEK--LSALEKKV 482

Query: 537 VVGNKGIYS----NRKITSSSNMHL 599
           +VG   + +      K+   SNM L
Sbjct: 483 IVGGVDLLAKAEEQEKLLEESNMEL 507
>sp|P81412|DP2S_PYRFU DNA polymerase II small subunit (Pol II) (DP1)
          Length = 613

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 372 DEEVEAEDIENDKKEQKRNSARLYIEIYDNDGKMKQFYKSPIIQKKDLDPLAQKSVVGNK 551
           DE V    + N K+E  +    L  EI D  GK+K F        ++   +   +VV  K
Sbjct: 258 DETVTIIGLVNSKREVNKG---LIFEIEDLTGKVKVFLPKDSEDYREAFKVLPDAVVAFK 314

Query: 552 GIYSNRKITSSSNMHL 599
           G+YS R I  ++  +L
Sbjct: 315 GVYSKRGILYANKFYL 330
>sp|P14732|LAM2_CHICK Lamin B2
          Length = 600

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 24/77 (31%), Positives = 39/77 (50%)
 Frame = +3

Query: 288 IHNKEILFKITKERLNLKLDFFGIQFLYDEEVEAEDIENDKKEQKRNSARLYIEIYDNDG 467
           + N  +L KI+++      +  GI+ LY+ E+   D      E  +  ARL IEI     
Sbjct: 48  LENDRLLVKISEKEEVTTREVSGIKNLYESELA--DARRVLDETAKERARLQIEIGKLRA 105

Query: 468 KMKQFYKSPIIQKKDLD 518
           ++++F KS   +KKD D
Sbjct: 106 ELEEFNKS--YKKKDAD 120
>sp|O51604|ERA_BORBU GTP-binding protein era homolog
          Length = 290

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 42/209 (20%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
 Frame = +3

Query: 210 ISVIGPDGDDKHDMLKLVPLPSHDYPIHNKEILFKITKERLNLKLDFFG--IQFLYDEEV 383
           I +    G++++ ML++         I N +I F +   +++LK        QFL ++ +
Sbjct: 90  IDIQDKPGEEENKMLEI---------IKNSKIKFLVILNKIDLKNTKIKEITQFLKEKGI 140

Query: 384 EAEDIENDKKEQKRNSARLYIEIYDN--DGKM---KQFYKSPIIQKKDLDPLAQKSVVGN 548
           E  +I     E+K N+  L  +IY+N  +G +   +++Y    I  +  + + +K++   
Sbjct: 141 EDSNIIKISAEKKINTEELKNKIYENFSEGPLYYPQEYYTDQEINFRISEIIREKAIENL 200

Query: 549 K-----GIYSNRKITSSSNMHLFFRSDVWI--KSYSGFCLVINHAKLQCYQD--IHDIRK 701
           K      +Y +     +    LF R+++++  +S  G  +  N  +++   +     I K
Sbjct: 201 KEELPYSLYVDIDTLENKKGSLFIRANIFVANESQKGIIVGKNGKEIKSIGERARKTIAK 260

Query: 702 LFSGKLHYIFQRFRFTTTQNLTDTISQKL 788
           +F  K + +F + +     N  D + ++L
Sbjct: 261 IFETKCN-LFLQVKLKKNWNKEDKLIKRL 288
>sp|P25357|SNT1_YEAST Probable DNA-binding protein SNT1
          Length = 1226

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 14/55 (25%)
 Frame = +3

Query: 300 EILFKITKE----RLNLKLDFFGIQFLYDEEVE----------AEDIENDKKEQK 422
           +I+ KI KE    ++NLK D+F +Q  Y++E E           E+IEN +KE +
Sbjct: 517 KIISKIKKEEHLKKINLKHDYFDLQKKYEKECEILTKLSENLRKEEIENKRKEHE 571
>sp|Q8K985|MDLA_BUCAP Multidrug resistance-like ATP-binding protein mdlA
          Length = 581

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 186 IYLEHNA--SISVIGPDGDDKHDMLKLVPLPSHDYPIHNKEILFKITKERLNLKLDFF 353
           IYL  N   ++ + GP G  K  +LKL+      + IH  EIL+  +   L LK+D++
Sbjct: 355 IYLSLNPGKTLGICGPTGAGKSTLLKLI---QRQFKIHKGEILYN-SSSLLELKIDYW 408
>sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)
          Length = 1231

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = +3

Query: 18  MEPSVSSENSMEDSNNKIETNLNQN-QPVFFRRYYEDSKLNLSICSDENPIWVEFPEIYL 194
           +E  +     ++++ ++IE  +N   + VF  RY +      +IC +E  IW++      
Sbjct: 264 LELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAF 323

Query: 195 EHNASISVIGPDGDDKHDMLKLVPLPSHDYPIHNKEILFKITKERLNLKLDFFGIQF 365
            +++ +  +G    DK   ++L  L +     +NKE         LN KL+ F  +F
Sbjct: 324 LNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNKE---------LNSKLELFTSRF 371
>sp|Q58969|Y1574_METJA Putative ATP-dependent helicase MJ1574
          Length = 684

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 31/195 (15%)
 Frame = +3

Query: 246 DMLKLVPLPSHDYPIHNKEILFKITKERLNLKLDFFGIQFLYDEEVEAEDIENDKKEQ-- 419
           +++K+  +P       N    FK   + +N  +D  G + LY  +V+A     +KK+   
Sbjct: 11  EIIKIYKIPERKGRFSN----FKFKNKEINELIDALGFK-LYLHQVKALKYLYNKKDVVV 65

Query: 420 -------KRNSARL-------------YIEIYDNDGKMKQFYKSPIIQKKDLDPLAQKSV 539
                  K    RL             Y+ IY     +   Y+   ++ +    +  K V
Sbjct: 66  TTSTASGKSEIFRLAIFDNFLSNPDDRYLLIYPTRALINNQYEKFSMENELFYKITNKRV 125

Query: 540 -----VGNKGIYSNRKITSSSNMHLFFRSDVW----IKSYSGFCLVINHAKLQCYQDIHD 692
                 G+ G+   R+I       LF   D+     +K+++ +  ++ + KL    ++H 
Sbjct: 126 KAEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKNHNNYLWLLKNLKLLVVDELHV 185

Query: 693 IRKLFSGKLHYIFQR 737
            R +F   + Y+F+R
Sbjct: 186 YRGVFGTNMVYVFKR 200
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,247,281
Number of Sequences: 369166
Number of extensions: 2204931
Number of successful extensions: 6364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6354
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)