Planaria EST Database


DrC_01844

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01844
         (532 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81305|Y22B_METJA  Hypothetical protein MJ0226.2                33   0.43 
sp|P29867|NU2M_DROMA  NADH-ubiquinone oxidoreductase chain 2...    32   1.3  
sp|P41820|BFR1_SCHPO  Brefeldin A resistance protein               31   2.1  
sp|Q9HBG4|VPP4_HUMAN  Vacuolar proton translocating ATPase 1...    31   2.1  
sp|P21421|RPOB_PLAFA  DNA-directed RNA polymerase beta chain       30   2.8  
sp|P03896|NU2M_DROME  NADH-ubiquinone oxidoreductase chain 2...    30   2.8  
sp|P24880|NU4M_ASCSU  NADH-ubiquinone oxidoreductase chain 4...    30   3.6  
sp|Q920R6|VPP4_MOUSE  Vacuolar proton translocating ATPase 1...    30   3.6  
sp|P29869|NU2M_DROSI  NADH-ubiquinone oxidoreductase chain 2...    30   3.6  
sp|P48906|NU2M_PICCA  NADH-ubiquinone oxidoreductase chain 2...    30   4.8  
>sp|P81305|Y22B_METJA Hypothetical protein MJ0226.2
          Length = 122

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
 Frame = -2

Query: 333 LWLIFNFIISLYSFISIHIFKLHSAQLI-------SQFDPY*FNTILLFIYLISIDFMNF 175
           L  IF FI SLY+FI     +  + ++I         F PY F +ILL   ++ + F  F
Sbjct: 18  LSFIFGFI-SLYAFIKYSKLERKNKEIIYVYVDNLKNFSPYMFYSILLTFTIVFVIFALF 76

Query: 174 I----YYDFHIHINMLFVWE*II 118
           I     +D ++ + MLF +  II
Sbjct: 77  ICFVFNFDLYLGLTMLFSYFLII 99
>sp|P29867|NU2M_DROMA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 274

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 375 HISFTK*LLIIKNDLWLIFNFIISLYSFISIHIFKLHSAQLISQFDPY*FNTILLFIYLI 196
           H+ +    L+I   +WLI+ F  S  SF+   +F +     ++Q   +  N+ +L   L 
Sbjct: 115 HLGWMLSSLMISESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL- 173

Query: 195 SIDFMNFI 172
              FMNF+
Sbjct: 174 ---FMNFL 178
>sp|P41820|BFR1_SCHPO Brefeldin A resistance protein
          Length = 1530

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -3

Query: 500 FITTQGFGFKFQKFYINSNFYS-KLSETHVYASGKIL*FYISF-----TSHLQNNFS 348
           +I +  F F FQ   I S FY  KL+   V++ G +L F I F      S + N FS
Sbjct: 540 YIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRGGVLFFSILFCALQSLSEIANMFS 596
>sp|Q9HBG4|VPP4_HUMAN Vacuolar proton translocating ATPase 116 kDa subunit a isoform 4
           (V-ATPase 116-kDa isoform a4) (Vacuolar proton
           translocating ATPase 116 kDa subunit a kidney isoform)
          Length = 840

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = -2

Query: 369 SFTK*LLIIKNDLWLIFNFIISLYSFISIHIFKLHSAQLISQFDPY*FNTILLFIYLISI 190
           S+   + +I   + ++F  I+SL++    HI+   +  +I QF P     + LF YL+ +
Sbjct: 538 SYKMKMSVILGIVQMVFGVILSLFN----HIYFRRTLNIILQFIPEMIFILCLFGYLVFM 593

Query: 189 DFMNFIYYDFHI 154
               +  +D H+
Sbjct: 594 IIFKWCCFDVHV 605
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
          Length = 1024

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
 Frame = -2

Query: 405 WQNIMILYFIHISFTK*LLIIKNDLWLIFNF------IISLYSFISIH---IFKLHSAQL 253
           + NI+IL  ++ +  +  L  KN+   I  F      II +Y +IS+    IFK+    +
Sbjct: 105 YNNIIILNGLYKTCIQ--LFKKNNKIFIIKFKNNNKNIIYVYIYISLGLRIIFKISKLNI 162

Query: 252 ISQFDPY*FNTILLFIYLISIDFMNFIYYDFHIHINMLFVWE*IIVYNGI 103
              F+ + FN ++L +YL +I    +I  +  + I    + + I++YN I
Sbjct: 163 DCYFNNFKFNFLILLLYLNNI----YINKNISLFIYNNIINKKILIYNYI 208
>sp|P03896|NU2M_DROME NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 341

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -2

Query: 375 HISFTK*LLIIKNDLWLIFNFIISLYSFISIHIFKLHSAQLISQFDPY*FNTILLFIYLI 196
           H+ +    L+I   +WLI  F  S  SF+   +F +     ++Q   +  N+ +L   L 
Sbjct: 182 HLGWMLSSLMISESIWLILFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL- 240

Query: 195 SIDFMNFI 172
              FMNF+
Sbjct: 241 ---FMNFL 245
>sp|P24880|NU4M_ASCSU NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
           4)
          Length = 409

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 213 LFIYLISIDFMNFIYYDFHIHINMLFV 133
           LF+Y  S  F++ +Y+DF++   M+FV
Sbjct: 136 LFVYFKSFFFISLVYFDFNLSWEMVFV 162
>sp|Q920R6|VPP4_MOUSE Vacuolar proton translocating ATPase 116 kDa subunit a isoform 4
           (V-ATPase 116-kDa isoform a4) (Vacuolar proton
           translocating ATPase 116 kDa subunit a kidney isoform)
          Length = 833

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 327 LIFNFIISLYSFISIHIFKLHSAQLISQFDPY*FNTILLFIYLISIDFMNFIYYDFH 157
           +IF  I+SL++    HI+   +  +I QF P     + LF YL+ +    +  YD H
Sbjct: 552 MIFGVILSLFN----HIYFRRTLNIILQFIPEMIFMLSLFGYLVFMIIFKWCRYDAH 604
>sp|P29869|NU2M_DROSI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
 sp|P29868|NU2M_DROSE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 274

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -2

Query: 375 HISFTK*LLIIKNDLWLIFNFIISLYSFISIHIFKLHSAQLISQFDPY*FNTILLFIYLI 196
           H+ +    L+    +WLI+ F  S  SF+   +F +     ++Q   +  N+ +L   L 
Sbjct: 115 HLGWMLSSLMFSESIWLIYFFFYSFLSFVLTFMFNIFKLFHLNQLFSWFVNSKILKFTL- 173

Query: 195 SIDFMNFI 172
              FMNF+
Sbjct: 174 ---FMNFL 178
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 567

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -2

Query: 345 IKNDLWLIFNFIISLYSFISI-HIFKLHSAQ--LISQFDPY*FNTILLFIYLISIDFMNF 175
           IKN+ +LIF  II + SFI I  +F  +     LIS  +    N + L + LI    ++ 
Sbjct: 417 IKNNRYLIFCLIIIIGSFIGIPPLFGFYGKYYLLISSINS---NYLFLSLLLIISSIISS 473

Query: 174 IYYDFHIHINM 142
           IYY + ++I +
Sbjct: 474 IYYLYFLNITL 484
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,087,299
Number of Sequences: 369166
Number of extensions: 706996
Number of successful extensions: 1302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)