Planaria EST Database


DrC_01843

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01843
         (462 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UHF4|I20RA_HUMAN  Interleukin-20 receptor alpha chain p...    32   0.53 
sp|O43670|ZN207_HUMAN  Zinc finger protein 207                     30   2.0  
sp|P57311|MURG_BUCAI  UDP-N-acetylglucosamine--N-acetylmuram...    30   3.4  
sp|Q8DJ45|PTH_SYNEL  Peptidyl-tRNA hydrolase (PTH)                 28   7.6  
sp|Q92263|G3P_PICPA  Glyceraldehyde-3-phosphate dehydrogenas...    28   7.6  
sp|Q7N6Z9|HEM6_PHOLL  Coproporphyrinogen III oxidase, aerobi...    28   9.9  
sp|Q96UF1|G3P3_RHIRA  Glyceraldehyde-3-phosphate dehydrogena...    28   9.9  
>sp|Q9UHF4|I20RA_HUMAN Interleukin-20 receptor alpha chain precursor (IL-20R-alpha)
           (IL-20R1) (Cytokine receptor family 2 member 8)
           (Cytokine receptor class-II, member 8) (CRF2-8)
           (ZcytoR7)
          Length = 553

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
 Frame = +1

Query: 52  TSSTQNVKVILVHPE------DDIP--LEQIRLKLSKYTSFLNIIKTSDDLAWSQPITSH 207
           T+  +++ V+L  PE      +D+P  ++QI   L    S LN   T  +  WSQ +T+H
Sbjct: 145 TTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLN---TKSNRTWSQCVTNH 201

Query: 208 SVSLRISENDCIXXXXXXVNTYVSHLGTPMQRQPA 312
           ++ L   E + +      V ++V   G P + QP+
Sbjct: 202 TLVLTWLEPNTL--YCVHVESFVP--GPPRRAQPS 232
>sp|O43670|ZN207_HUMAN Zinc finger protein 207
          Length = 478

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 43  TKP-TSSTQNVKVILVHPEDDIPLEQIRLKLSKY 141
           +KP T +T +    L+HP++DI LE+ R +L KY
Sbjct: 349 SKPATLTTTSATSKLIHPDEDISLEERRAQLPKY 382
>sp|P57311|MURG_BUCAI UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 354

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
 Frame = +1

Query: 7   GGNEISKVIQKVTKPTSSTQNVKVILVHPEDDIPLEQIRLKLSK-------YTSFLNIIK 165
           GG++ S ++ ++    S     K+I  H   +  LE+ + K +K        TSF+  I 
Sbjct: 187 GGSQGSSILNRILPEVSFLLKEKIIFWHQTGNYELEKTKKKYNKLRLNQNLITSFIKNIA 246

Query: 166 TSDDLAWSQPITSHSVSLRISE 231
           ++ +  W+  I   S +L +SE
Sbjct: 247 SAYE--WADLIICRSGALTVSE 266
>sp|Q8DJ45|PTH_SYNEL Peptidyl-tRNA hydrolase (PTH)
          Length = 205

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 73  KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKT 168
           + ++VH + D+PL ++RL+LS  T   N IK+
Sbjct: 90  RTLVVHDDADLPLGRLRLRLSGSTGGHNGIKS 121
>sp|Q92263|G3P_PICPA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 73  KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKTS 171
           KV++  P  D P+  + +   KYTS LNI+  +
Sbjct: 117 KVVITAPSKDAPMFVVGVNEEKYTSDLNIVSNA 149
>sp|Q7N6Z9|HEM6_PHOLL Coproporphyrinogen III oxidase, aerobic (Coproporphyrinogenase)
           (Coprogen oxidase)
          Length = 302

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 384 KTGSSKIIWFYKNTNILCNPRSNHRRLSLHWSTQMRNICINWG 256
           K G + + WF    ++   P    +  ++HW T  RNIC  +G
Sbjct: 118 KEGEAPVWWFGGGFDL--TPYYGFKEDAIHWHTTARNICRPYG 158
>sp|Q96UF1|G3P3_RHIRA Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH 3)
          Length = 339

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 73  KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKTS 171
           KVI+  P  D P+  + + L KYTS L +I  +
Sbjct: 118 KVIISAPSADAPMFVVGVNLDKYTSDLTVISNA 150
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,609,406
Number of Sequences: 369166
Number of extensions: 1119055
Number of successful extensions: 2683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)