Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_B03
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHF4|I20RA_HUMAN Interleukin-20 receptor alpha chain p... 32 0.53
sp|O43670|ZN207_HUMAN Zinc finger protein 207 30 2.0
sp|P57311|MURG_BUCAI UDP-N-acetylglucosamine--N-acetylmuram... 30 3.4
sp|Q8DJ45|PTH_SYNEL Peptidyl-tRNA hydrolase (PTH) 28 7.6
sp|Q92263|G3P_PICPA Glyceraldehyde-3-phosphate dehydrogenas... 28 7.6
sp|Q7N6Z9|HEM6_PHOLL Coproporphyrinogen III oxidase, aerobi... 28 9.9
sp|Q96UF1|G3P3_RHIRA Glyceraldehyde-3-phosphate dehydrogena... 28 9.9
>sp|Q9UHF4|I20RA_HUMAN Interleukin-20 receptor alpha chain precursor (IL-20R-alpha)
(IL-20R1) (Cytokine receptor family 2 member 8)
(Cytokine receptor class-II, member 8) (CRF2-8)
(ZcytoR7)
Length = 553
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = +1
Query: 52 TSSTQNVKVILVHPE------DDIP--LEQIRLKLSKYTSFLNIIKTSDDLAWSQPITSH 207
T+ +++ V+L PE +D+P ++QI L S LN T + WSQ +T+H
Sbjct: 145 TTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLN---TKSNRTWSQCVTNH 201
Query: 208 SVSLRISENDCIXXXXXXVNTYVSHLGTPMQRQPA 312
++ L E + + V ++V G P + QP+
Sbjct: 202 TLVLTWLEPNTL--YCVHVESFVP--GPPRRAQPS 232
>sp|O43670|ZN207_HUMAN Zinc finger protein 207
Length = 478
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 43 TKP-TSSTQNVKVILVHPEDDIPLEQIRLKLSKY 141
+KP T +T + L+HP++DI LE+ R +L KY
Sbjct: 349 SKPATLTTTSATSKLIHPDEDISLEERRAQLPKY 382
>sp|P57311|MURG_BUCAI UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase
(Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
transferase)
Length = 354
Score = 29.6 bits (65), Expect = 3.4
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 7 GGNEISKVIQKVTKPTSSTQNVKVILVHPEDDIPLEQIRLKLSK-------YTSFLNIIK 165
GG++ S ++ ++ S K+I H + LE+ + K +K TSF+ I
Sbjct: 187 GGSQGSSILNRILPEVSFLLKEKIIFWHQTGNYELEKTKKKYNKLRLNQNLITSFIKNIA 246
Query: 166 TSDDLAWSQPITSHSVSLRISE 231
++ + W+ I S +L +SE
Sbjct: 247 SAYE--WADLIICRSGALTVSE 266
>sp|Q8DJ45|PTH_SYNEL Peptidyl-tRNA hydrolase (PTH)
Length = 205
Score = 28.5 bits (62), Expect = 7.6
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 73 KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKT 168
+ ++VH + D+PL ++RL+LS T N IK+
Sbjct: 90 RTLVVHDDADLPLGRLRLRLSGSTGGHNGIKS 121
>sp|Q92263|G3P_PICPA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 28.5 bits (62), Expect = 7.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 73 KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKTS 171
KV++ P D P+ + + KYTS LNI+ +
Sbjct: 117 KVVITAPSKDAPMFVVGVNEEKYTSDLNIVSNA 149
>sp|Q7N6Z9|HEM6_PHOLL Coproporphyrinogen III oxidase, aerobic (Coproporphyrinogenase)
(Coprogen oxidase)
Length = 302
Score = 28.1 bits (61), Expect = 9.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 384 KTGSSKIIWFYKNTNILCNPRSNHRRLSLHWSTQMRNICINWG 256
K G + + WF ++ P + ++HW T RNIC +G
Sbjct: 118 KEGEAPVWWFGGGFDL--TPYYGFKEDAIHWHTTARNICRPYG 158
>sp|Q96UF1|G3P3_RHIRA Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH 3)
Length = 339
Score = 28.1 bits (61), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 73 KVILVHPEDDIPLEQIRLKLSKYTSFLNIIKTS 171
KVI+ P D P+ + + L KYTS L +I +
Sbjct: 118 KVIISAPSADAPMFVVGVNLDKYTSDLTVISNA 150
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,609,406
Number of Sequences: 369166
Number of extensions: 1119055
Number of successful extensions: 2683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)