Planaria EST Database


DrC_01838

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01838
         (524 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13233|CN37_RAT  2',3'-cyclic-nucleotide 3'-phosphodieste...    74   2e-13
sp|P16330|CN37_MOUSE  2',3'-cyclic-nucleotide 3'-phosphodies...    70   2e-12
sp|P09543|CN37_HUMAN  2',3'-cyclic-nucleotide 3'-phosphodies...    70   4e-12
sp|P06623|CN37_BOVIN  2',3'-cyclic-nucleotide 3'-phosphodies...    67   2e-11
sp|P12625|PHB_ALCFA  Poly(3-hydroxybutyrate) depolymerase pr...    32   0.93 
sp|P97324|G6PD2_MOUSE  Glucose-6-phosphate 1-dehydrogenase 2...    30   2.7  
sp|Q12230|LSP1_YEAST  Sphingolipid long chain base-responsiv...    30   4.6  
sp|P05370|G6PD_RAT  Glucose-6-phosphate 1-dehydrogenase (G6PD)     29   6.0  
sp|P11413|G6PD_HUMAN  Glucose-6-phosphate 1-dehydrogenase (G...    29   6.0  
sp|O55044|G6PD_CRIGR  Glucose-6-phosphate 1-dehydrogenase (G...    29   6.0  
>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 420

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
 Frame = +3

Query: 81  IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKD------DLI 242
           +PLYFGWFL    S+ +       LE      E+    A   EL  F+S D      DL+
Sbjct: 185 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRHFISGDEPKEKLDLV 238

Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
            ++  +    LH TTKFC YG  + AE Y +   V+ S G+ F + +    +TP+T  + 
Sbjct: 239 SYFGKRPPGVLHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISALFVTPKTAGAQ 298

Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
           + L   +++QLW  D  +  SS +   GS+
Sbjct: 299 VVL-NEQELQLWPSDLDKPSSSESLPPGSR 327
>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 420

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
 Frame = +3

Query: 81  IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKDD------LI 242
           +PLYFGWFL    S+ +       LE      E+    A   EL  F+S D+      L+
Sbjct: 185 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRHFISGDEPKEKLELV 238

Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
            ++  +    LH TTKFC YG  + AE Y +   V+ S G+ F + +    +TP+T  + 
Sbjct: 239 SYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQ 298

Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
           + L   +++QLW  D  +  +S     GS+
Sbjct: 299 VVLT-DQELQLWPSDLDKPSASEGLPPGSR 327
>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 421

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
 Frame = +3

Query: 81  IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKD------DLI 242
           +PLYFGWFL    S+ +       LE      E+    A   EL +FV  D      DL+
Sbjct: 186 LPLYFGWFLTKKSSETLRKAGQVFLE------ELGNHKAFKKELRQFVPGDEpreKMDLV 239

Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
            ++  +    LH TTKFC YG    AE Y +   +++S  + F + +    +TP+T  + 
Sbjct: 240 TYFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGAR 299

Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
           ++L+  +Q+QLW  D  +   + N   GS+
Sbjct: 300 VELS-EQQLQLWPSDVDKLSPTDNLPRGSR 328
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 400

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
 Frame = +3

Query: 81  IPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLGLAAACELPEFVSKDD------LI 242
           +PLYFGWFL    S  +       LE      E+    A   EL  FVS D+      L+
Sbjct: 165 LPLYFGWFLTKKSSAALWKTGQTFLE------ELGNHKAFKKELRHFVSGDEpreKIELV 218

Query: 243 DHWRMKTER-LHVTTKFCGYGTVSDAEAYLKSGAVQESLGQLFPIHVKGFLLTPRTFSSH 419
            ++  +    LH TTKFC YG  + AE Y +   V++S  + F + +    +TP+T  + 
Sbjct: 219 TYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQDVVKKSYCKAFTLTISALFVTPKTTGAR 278

Query: 420 IQLAGPKQIQLWAGDDQEDVSSANKQYGSK 509
           ++L+  +Q+ LW  D  +   S N   GS+
Sbjct: 279 VELS-EQQLALWPNDVDKLSPSDNLPRGSR 307
>sp|P12625|PHB_ALCFA Poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase)
          Length = 488

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -2

Query: 271 NLSVFILQ*SIRSSLETNSGSSQAAANPNRISVILIINSRVSLANNRILSLS 116
           N  VF++   ++++L   SG+ QA + P  ++V    ++ VSL+ N + + S
Sbjct: 320 NYPVFVMDYWVKNNLRAGSGTGQAGSAPTGLAVTATTSTSVSLSWNAVANAS 371
>sp|P97324|G6PD2_MOUSE Glucose-6-phosphate 1-dehydrogenase 2 (G6PD)
          Length = 513

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +3

Query: 12  HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFAND--TLELMISITEIR 185
           H+K  ++E +  ++ +   +   +    G F N  +S+  L + N    ++L  +   + 
Sbjct: 382 HQKCKRNELVIRMQPNEAVYTTMMTKKPGMFFNPEESELDLTYGNKYKNVKLPGAYERLI 441

Query: 186 LGLAAACELPEFVSKDDLIDHWRMKTERLH 275
           L +   C++  FV  D+L + WR+ T  LH
Sbjct: 442 LDVFCGCQM-HFVRTDELREGWRIFTPLLH 470
>sp|Q12230|LSP1_YEAST Sphingolipid long chain base-responsive protein LSP1
          Length = 341

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
 Frame = +3

Query: 279 TTKFCGYGTVSDAEAYLKSGA------VQESLGQLFPIHVKGFLLTPRTFSSHIQLAGPK 440
           +TK   +G  S A ++ K+ A      +   L QL     KG L      +S  + A  K
Sbjct: 27  STKSKFFGKASIASSFRKNAAGNFGPELARKLSQLVKTE-KGVLRAMEVVASERREAA-K 84

Query: 441 QIQLWAGDDQEDVSSANKQYG 503
           Q+ LW  D+ +DVS    + G
Sbjct: 85  QLSLWGADNDDDVSDVTDKLG 105
>sp|P05370|G6PD_RAT Glucose-6-phosphate 1-dehydrogenase (G6PD)
          Length = 515

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +3

Query: 12  HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
           H++  ++E +  ++ +   +   +    G F N  +S+  L + N    + +     RL 
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441

Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
           L   C     FV  D+L + WR+ T  LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
>sp|P11413|G6PD_HUMAN Glucose-6-phosphate 1-dehydrogenase (G6PD)
          Length = 515

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +3

Query: 12  HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
           H++  ++E +  ++ +   +   +    G F N  +S+  L + N    + +     RL 
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441

Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
           L   C     FV  D+L + WR+ T  LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
>sp|O55044|G6PD_CRIGR Glucose-6-phosphate 1-dehydrogenase (G6PD)
          Length = 515

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +3

Query: 12  HEKSTKSEPIWEIEKSINEFEPAIPLYFGWFLNDTDSDNILLFANDTLELMISITEIRLG 191
           H++  ++E +  ++ +   +   +    G F N  +S+  L + N    + +     RL 
Sbjct: 382 HQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAYERLI 441

Query: 192 LAAAC-ELPEFVSKDDLIDHWRMKTERLH 275
           L   C     FV  D+L + WR+ T  LH
Sbjct: 442 LDVFCGSQMHFVRSDELREAWRIFTPLLH 470
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,825,532
Number of Sequences: 369166
Number of extensions: 1212961
Number of successful extensions: 2892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)